Factsheet for TraesCS6D01G190100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22160430
golgi: 25769308
unclear: 25769308
nucleus: 26228564
nucleus: 26579155

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74050.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT1G74050.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT1G74050.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT1G74050.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT1G74050.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT1G74050.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT1G74050.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT1G74050.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT1G74050.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G204900.1	Wheat	mitochondrion	100.0	100.0
TraesCS6B01G225600.1	Wheat	mitochondrion	98.63	98.63
Os02t0591700-01	Rice	nucleus	89.95	89.95
EES07070	Sorghum	mitochondrion	88.58	88.58
Zm00001d050921_P002	Maize	plastid	85.84	85.84
Zm00001d050920_P002	Maize	plastid	85.84	85.84
Zm00001d017047_P001	Maize	plastid	85.39	85.39
TraesCS6D01G180100.1	Wheat	mitochondrion	93.15	82.26
HORVU6Hr1G052600.3	Barley	plastid	94.98	79.69
GSMUA_Achr9P22280_001	Banana	cytosol	70.32	74.4
GSMUA_Achr3P28460_001	Banana	cytosol	68.49	72.46
CDY11078	Canola	cytosol	63.47	67.48
GSMUA_Achr4P06390_001	Banana	mitochondrion	70.78	66.24
Solyc11g012110.1.1	Tomato	nucleus	67.12	64.19
PGSC0003DMT400034524	Potato	cytosol	66.67	63.76
VIT_13s0064g01390.t01	Wine grape	cytosol	67.58	63.52
Solyc04g014720.2.1	Tomato	nucleus	66.21	63.32
KRH13901	Soybean	nucleus	66.67	62.93
PGSC0003DMT400060697	Potato	cytosol	65.75	62.88
AT1G74050.1	Thale cress	cytosol	66.67	62.66
Bra015940.1-P	Field mustard	cytosol	66.67	62.66
CDX96510	Canola	cytosol	66.21	62.23
AT1G74060.1	Thale cress	cytosol	66.21	62.23
Bra008128.1-P	Field mustard	cytosol	66.21	62.23
KRH43467	Soybean	nucleus	65.75	62.07
KRH43314	Soybean	nucleus	65.75	62.07
Solyc05g054070.2.1	Tomato	nucleus	64.84	62.01
CDY21701	Canola	cytosol	66.21	61.97
AT1G18540.1	Thale cress	cytosol	65.75	61.8
CDY66361	Canola	cytosol	65.75	61.8
CDY45859	Canola	cytosol	65.3	61.64
PGSC0003DMT400021753	Potato	cytosol	64.38	61.57
CDX81879	Canola	extracellular	65.75	61.54
CDY26150	Canola	cytosol	65.75	61.54
Bra031034.1-P	Field mustard	cytosol	65.75	61.54
KRH43315	Soybean	endoplasmic reticulum, nucleus	64.84	61.47
KRH59448	Soybean	endoplasmic reticulum, nucleus	64.84	61.21
CDY19222	Canola	cytosol	65.3	61.11
CDX96716	Canola	cytosol	65.3	61.11
Bra025895.1-P	Field mustard	cytosol	64.84	60.68
CDX83840	Canola	cytosol	64.38	60.26
Bra016555.1-P	Field mustard	cytosol	63.93	59.83
CDX73042	Canola	cytosol	63.47	59.66
KRH59450	Soybean	endoplasmic reticulum	64.38	58.26
Zm00001d025591_P001	Maize	cytosol	49.32	47.79
Zm00001d041756_P001	Maize	plastid	50.68	26.3

Protein Annotations

MapMan:17.1.2.1.4	Gene3D:2.30.30.30	InterPro:60S_ribosomal_L6E	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722
PFAM:PF01159	PANTHER:PTHR10715	PANTHER:PTHR10715:SF3	InterPro:Rib_L2_dom2	SUPFAM:SSF50104	EnsemblPlantsGene:TraesCS6D01G190100
EnsemblPlants:TraesCS6D01G190100.1	InterPro:Translation_prot_SH3-like_sf	TIGR:cd13156	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:+:262781240..262782724

Molecular Weight (calculated)

24470.9 Da

IEP (calculated)

10.786

GRAVY (calculated)

-0.554

Length

219 amino acids

Sequence
(BLAST)

001: MAPTSKMALG IKRASRSHTY HRRGLWAIKA KHGGAFPKAE KPAAVAEPKF YPADDVKPRT ASTRKPKPTK LRSTITPGTV LILLAGRYMG KRVVFLKQLK
101: SGLLLISGPF KINGVPVRRV NQAYVIATST KVDISGVNVE KFDDKYFARD KKTRAKKTEG ELFETEKETT KNLPEFKKDD QKAIDAELIK AIEAVPDLKN
201: YLGARFSLRD GDKPHEMTF

Best Arabidopsis Sequence Match ( AT1G74050.1 )
(BLAST)

001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF

Arabidopsis Description

RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.