Factsheet for Solyc05g054070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021753	Potato	cytosol	97.82	97.82
Solyc11g012110.1.1	Tomato	nucleus	91.27	91.27
Solyc04g014720.2.1	Tomato	nucleus	89.08	89.08
VIT_08s0007g06150.t01	Wine grape	cytosol	80.79	80.09
KRH43467	Soybean	nucleus	79.91	78.88
KRH43314	Soybean	nucleus	79.04	78.02
KRH13901	Soybean	nucleus	79.04	78.02
KRH43315	Soybean	endoplasmic reticulum, nucleus	78.6	77.92
KRH59448	Soybean	endoplasmic reticulum, nucleus	78.17	77.16
GSMUA_Achr9P22280_001	Banana	cytosol	69.0	76.33
CDY11078	Canola	cytosol	68.56	76.21
Bra008128.1-P	Field mustard	cytosol	77.29	75.97
CDX81879	Canola	extracellular	77.29	75.64
CDY66361	Canola	cytosol	76.86	75.54
AT1G18540.1	Thale cress	cytosol	76.42	75.11
CDY45859	Canola	cytosol	75.98	75.0
GSMUA_Achr3P28460_001	Banana	cytosol	67.69	74.88
Bra031034.1-P	Field mustard	cytosol	76.42	74.79
CDX96716	Canola	cytosol	76.42	74.79
CDY19222	Canola	cytosol	76.42	74.79
CDY26150	Canola	cytosol	76.42	74.79
AT1G74050.1	Thale cress	cytosol	75.98	74.68
CDY21701	Canola	cytosol	75.98	74.36
AT1G74060.1	Thale cress	cytosol	75.55	74.25
KRH59450	Soybean	endoplasmic reticulum	78.17	73.97
CDX83840	Canola	cytosol	75.55	73.93
Bra025895.1-P	Field mustard	cytosol	75.55	73.93
Bra016555.1-P	Field mustard	cytosol	75.55	73.93
CDX96510	Canola	cytosol	75.11	73.82
Bra015940.1-P	Field mustard	cytosol	74.67	73.39
GSMUA_Achr4P06390_001	Banana	mitochondrion	74.24	72.65
CDX73042	Canola	cytosol	72.05	70.82
Zm00001d049263_P001	Maize	cytosol	20.96	69.57
EES12351	Sorghum	mitochondrion	65.07	68.04
Zm00001d017047_P001	Maize	plastid	65.07	68.04
EES07070	Sorghum	mitochondrion	64.19	67.12
Os04t0473400-01	Rice	nucleus, plastid	64.63	66.67
Zm00001d050920_P002	Maize	plastid	63.76	66.67
Zm00001d050921_P002	Maize	plastid	63.32	66.21
TraesCS6D01G190100.1	Wheat	nucleus	62.01	64.84
TraesCS6B01G225600.1	Wheat	mitochondrion	62.01	64.84
TraesCS6A01G204900.1	Wheat	mitochondrion	62.01	64.84
Os02t0591700-01	Rice	nucleus	61.57	64.38
TraesCS6D01G180100.1	Wheat	mitochondrion	61.57	56.85
HORVU6Hr1G041750.1	Barley	mitochondrion	58.95	56.72
TraesCS6B01G230300.2	Wheat	mitochondrion	60.26	55.65
HORVU6Hr1G052600.3	Barley	plastid	61.14	53.64
Zm00001d025591_P001	Maize	cytosol	41.48	42.04
Zm00001d041756_P001	Maize	plastid	42.36	22.99

Protein Annotations

MapMan:17.1.2.1.4	Gene3D:2.30.30.30	InterPro:60S_ribosomal_L6E	GO:GO:0000027	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0022625	InterPro:IPR014722	UniProt:K4C286	PFAM:PF01159	PFAM:PF03868	PANTHER:PTHR10715
InterPro:Rib_L2_dom2	InterPro:Ribosomal_L6_N	SUPFAM:SSF50104	EnsemblPlantsGene:Solyc05g054070.2	EnsemblPlants:Solyc05g054070.2.1	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI00027668F2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:64050197..64052015

Molecular Weight (calculated)

25567.8 Da

IEP (calculated)

10.902

GRAVY (calculated)

-0.493

Length

229 amino acids

Sequence
(BLAST)

001: MAAKKTIRNP ELIRGVGKFS RSKMYHKKGL WAIKKKNGGK LPLHEKKPAV AVAAVKPPKF YPADDVKKPL VNKHKPKPTK LRASITPGTV LIILAGRFKG
101: KRVVFLKQLT SGLLLVTGPF KLNGVPLRRV NQAYVIGTST KVDVSGVNVE KIDDKYFAKQ VEKKQKKGEG EFFEDKKEEK NVLPQEKKDE QKTVDSALLK
201: AIEGIPELKA YLSARFSLKS GMKPHELVF

Best Arabidopsis Sequence Match ( AT1G18540.1 )
(BLAST)

001: MPAAKRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA QPKVDAPVEK PAKFYPAEDV KKPLVNRRKP KPTKLKASIT PGTVLIILAG
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF

Arabidopsis Description

RPL6A60S ribosomal protein L6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.