CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031034.1-P	Field mustard	cytosol	98.29	98.29
CDY21701	Canola	cytosol	97.86	97.86
CDY19222	Canola	cytosol	95.73	95.73
CDY26150	Canola	cytosol	95.73	95.73
CDX83840	Canola	cytosol	94.02	94.02
CDX96716	Canola	cytosol	94.02	94.02
AT1G18540.1	Thale cress	cytosol	92.31	92.7
CDX96510	Canola	cytosol	91.45	91.85
CDY66361	Canola	cytosol	91.03	91.42
CDY45859	Canola	cytosol	90.17	90.95
CDY11078	Canola	cytosol	79.06	89.81
CDX73042	Canola	cytosol	88.03	88.41
VIT_13s0064g01390.t01	Wine grape	cytosol	81.62	81.97
KRH43315	Soybean	endoplasmic reticulum, nucleus	79.49	80.52
KRH43467	Soybean	nucleus	78.63	79.31
KRH13901	Soybean	nucleus	78.21	78.88
KRH43314	Soybean	nucleus	77.78	78.45
KRH59448	Soybean	endoplasmic reticulum, nucleus	77.35	78.02
Solyc11g012110.1.1	Tomato	nucleus	75.64	77.29
Solyc05g054070.2.1	Tomato	nucleus	75.64	77.29
Solyc04g014720.2.1	Tomato	nucleus	75.64	77.29
PGSC0003DMT400034524	Potato	cytosol	75.64	77.29
KRH59450	Soybean	endoplasmic reticulum	79.91	77.27
PGSC0003DMT400060697	Potato	cytosol	75.21	76.86
Zm00001d049263_P001	Maize	cytosol	22.65	76.81
GSMUA_Achr3P28460_001	Banana	cytosol	67.95	76.81
GSMUA_Achr9P22280_001	Banana	cytosol	67.52	76.33
PGSC0003DMT400021753	Potato	cytosol	73.93	75.55
GSMUA_Achr4P06390_001	Banana	mitochondrion	72.22	72.22
EES12351	Sorghum	mitochondrion	64.96	69.41
Zm00001d050920_P002	Maize	plastid	64.96	69.41
Zm00001d050921_P002	Maize	plastid	64.53	68.95
Os04t0473400-01	Rice	nucleus, plastid	65.38	68.92
EES07070	Sorghum	mitochondrion	64.1	68.49
Zm00001d017047_P001	Maize	plastid	63.68	68.04
TraesCS6A01G204900.1	Wheat	mitochondrion	61.54	65.75
TraesCS6D01G190100.1	Wheat	nucleus	61.54	65.75
Os02t0591700-01	Rice	nucleus	61.11	65.3
TraesCS6B01G225600.1	Wheat	mitochondrion	60.68	64.84
HORVU6Hr1G041750.1	Barley	mitochondrion	58.12	57.14
TraesCS6D01G180100.1	Wheat	mitochondrion	58.97	55.65
HORVU6Hr1G052600.3	Barley	plastid	61.97	55.56
TraesCS6B01G230300.2	Wheat	mitochondrion	58.55	55.24
Zm00001d025591_P001	Maize	cytosol	42.31	43.81
Zm00001d041756_P001	Maize	plastid	42.73	23.7

Protein Annotations

MapMan:17.1.2.1.4	Gene3D:2.30.30.30	InterPro:60S_ribosomal_L6E	GO:A0A078D0U1	EnsemblPlants:CDX81879	ProteinID:CDX81879
ProteinID:CDX81879.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00136828001	InterPro:IPR014722	PFAM:PF01159
PFAM:PF03868	PANTHER:PTHR10715	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L6_N	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0004EC9ED4	SEG:seg	:	:	:	:

Description

BnaC08g37220D

Coordinates

chrLK031826:-:1228197..1229419

Molecular Weight (calculated)

26189.2 Da

IEP (calculated)

10.853

GRAVY (calculated)

-0.576

Length

234 amino acids

Sequence
(BLAST)

001: MPAAKQRTPK VSRNPDLIRG VGKYSRSQMY HKRGLWAIKA KNGGVFPRHD AKSKVDAPVE KPAKFYPAED VKKPLANRRK PKPTKLKSSI TPGTVLIILA
101: GRFKGKRVVF LKQLSSGLLL VTGPFKINGV PLRRVNQSYV IGTSTKVDIS GVNVEKFDDK YFGKVAEKKN KKGEGEFFEA EKEVKKEIPQ EKKEDQKTVD
201: SALIKAIELV PELKTYLGAR FSLSQGMKPH ELVF

Best Arabidopsis Sequence Match ( AT1G18540.1 )
(BLAST)

001: MPAAKRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA QPKVDAPVEK PAKFYPAEDV KKPLVNRRKP KPTKLKASIT PGTVLIILAG
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF

Arabidopsis Description

RPL6A60S ribosomal protein L6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.