Factsheet for Zm00001d041756_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74050.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT1G74050.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT1G74050.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT1G74050.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT1G74050.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT1G74050.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT1G74050.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT1G74050.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049263_P001	Maize	cytosol	13.03	79.71
Zm00001d025591_P001	Maize	cytosol	40.76	76.11
Zm00001d017047_P001	Maize	plastid	30.09	57.99
EES07070	Sorghum	mitochondrion	29.38	56.62
Zm00001d050920_P002	Maize	plastid	29.15	56.16
Zm00001d050921_P002	Maize	plastid	28.91	55.71
Os02t0591700-01	Rice	nucleus	26.78	51.6
TraesCS6D01G190100.1	Wheat	nucleus	26.3	50.68
TraesCS6B01G225600.1	Wheat	mitochondrion	26.3	50.68
TraesCS6A01G204900.1	Wheat	mitochondrion	26.3	50.68
GSMUA_Achr3P28460_001	Banana	cytosol	24.41	49.76
GSMUA_Achr9P22280_001	Banana	cytosol	23.46	47.83
CDY11078	Canola	cytosol	22.27	45.63
TraesCS6D01G180100.1	Wheat	mitochondrion	26.54	45.16
HORVU6Hr1G052600.3	Barley	plastid	27.73	44.83
TraesCS6B01G230300.2	Wheat	mitochondrion	26.3	44.76
PGSC0003DMT400034524	Potato	cytosol	24.17	44.54
HORVU6Hr1G041750.1	Barley	mitochondrion	24.88	44.12
Solyc11g012110.1.1	Tomato	nucleus	23.93	44.1
KRH43467	Soybean	nucleus	24.17	43.97
AT1G74050.1	Thale cress	cytosol	24.17	43.78
AT1G74060.1	Thale cress	cytosol	24.17	43.78
Bra015940.1-P	Field mustard	cytosol	24.17	43.78
CDX96510	Canola	cytosol	24.17	43.78
KRH13901	Soybean	nucleus	23.93	43.53
Bra031034.1-P	Field mustard	cytosol	23.93	43.16
CDY21701	Canola	cytosol	23.93	43.16
VIT_13s0064g01390.t01	Wine grape	cytosol	23.7	42.92
PGSC0003DMT400021753	Potato	cytosol	23.22	42.79
Solyc04g014720.2.1	Tomato	nucleus	23.22	42.79
CDY26150	Canola	cytosol	23.7	42.73
CDX81879	Canola	extracellular	23.7	42.73
KRH43314	Soybean	nucleus	23.46	42.67
CDX73042	Canola	cytosol	23.46	42.49
AT1G18540.1	Thale cress	cytosol	23.46	42.49
PGSC0003DMT400060697	Potato	cytosol	22.99	42.36
Solyc05g054070.2.1	Tomato	nucleus	22.99	42.36
CDX96716	Canola	cytosol	23.46	42.31
Bra025895.1-P	Field mustard	cytosol	23.46	42.31
CDY19222	Canola	cytosol	23.46	42.31
CDY66361	Canola	cytosol	23.22	42.06
Bra008128.1-P	Field mustard	cytosol	23.22	42.06
KRH43315	Soybean	endoplasmic reticulum, nucleus	22.99	41.99
GSMUA_Achr4P06390_001	Banana	mitochondrion	23.22	41.88
Bra016555.1-P	Field mustard	cytosol	23.22	41.88
CDX83840	Canola	cytosol	23.22	41.88
KRH59448	Soybean	endoplasmic reticulum, nucleus	22.99	41.81
CDY45859	Canola	cytosol	22.99	41.81
KRH59450	Soybean	endoplasmic reticulum	23.46	40.91

Protein Annotations

MapMan:13.2.1.3	MapMan:17.1.2.1.4	InterPro:60S_ribosomal_L6E	UniProt:A0A1D6MY10	ncoils:Coil	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	ProteinID:ONM33611.1	PFAM:PF01159	ScanProsite:PS01170	PANTHER:PTHR10715
PANTHER:PTHR10715:SF3	SUPFAM:SSF46785	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000844A3FD	InterPro:WH_DNA-bd_sf
EnsemblPlantsGene:Zm00001d041756	EnsemblPlants:Zm00001d041756_P001	EnsemblPlants:Zm00001d041756_T001	SEG:seg	:	:

Description

60S ribosomal protein L6-3

Coordinates

chr3:+:136125058..136129955

Molecular Weight (calculated)

47567.9 Da

IEP (calculated)

10.520

GRAVY (calculated)

-0.528

Length

422 amino acids

Sequence
(BLAST)

001: MPSSRPRLRP HSRPTPPRTL AYARTRAHTC GFRLPQLPRS RLPPGPRDAA AHRACDCARC AHRPPPIPAQ SPLVLKYGEE GKVVERVNLA TQQLRLLPKP
101: VVRICGLLAL DVSRDQLKVR YSIPRRQHRQ DPRTTVPVAS APSPTRKTPP KGEEAEGSPR NKAPRLDDAA RTTVPVASAP SPTQKTTLKG GRRRREACRR
201: NLHGPRRLCL WLRKLSYCHL AQMKYLFREA IQIKRVLLHD EKSLCMYADM EIILVMDVVE YTSPDHSPSM AICDAFYSKL LTFLDAHQKV PAKEQVDALS
301: KELFALSTVT GPFKINGVPI RRVNQTYVIA TSTKVDISGV DVSKFDDKYF AREKKQKVKK IEGELFETEK EASKSLPDFK KDDQKAVDAA LIKAIEAVPE
401: LKAYLVARFS LRDGDKPHEM VF

Best Arabidopsis Sequence Match ( AT1G74050.1 )
(BLAST)

001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF

Arabidopsis Description

RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.