Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12351 | Sorghum | mitochondrion | 88.41 | 27.85 |
| Os04t0473400-01 | Rice | nucleus, plastid | 84.06 | 26.13 |
| Zm00001d050920_P002 | Maize | plastid | 82.61 | 26.03 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 76.81 | 25.6 |
| Zm00001d050921_P002 | Maize | plastid | 81.16 | 25.57 |
| Zm00001d017047_P001 | Maize | plastid | 81.16 | 25.57 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 75.36 | 25.12 |
| Zm00001d025591_P001 | Maize | cytosol | 81.16 | 24.78 |
| CDY11078 | Canola | cytosol | 73.91 | 24.76 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 79.71 | 23.61 |
| CDY21701 | Canola | cytosol | 78.26 | 23.08 |
| AT1G74050.1 | Thale cress | cytosol | 76.81 | 22.75 |
| CDX96510 | Canola | cytosol | 76.81 | 22.75 |
| Bra015940.1-P | Field mustard | cytosol | 76.81 | 22.75 |
| AT1G74060.1 | Thale cress | cytosol | 76.81 | 22.75 |
| Solyc04g014720.2.1 | Tomato | nucleus | 75.36 | 22.71 |
| PGSC0003DMT400034524 | Potato | cytosol | 75.36 | 22.71 |
| Solyc11g012110.1.1 | Tomato | nucleus | 75.36 | 22.71 |
| CDX81879 | Canola | extracellular | 76.81 | 22.65 |
| Bra031034.1-P | Field mustard | cytosol | 76.81 | 22.65 |
| KRH13901 | Soybean | nucleus | 75.36 | 22.41 |
| CDY45859 | Canola | cytosol | 75.36 | 22.41 |
| CDY66361 | Canola | cytosol | 75.36 | 22.32 |
| Bra008128.1-P | Field mustard | cytosol | 75.36 | 22.32 |
| PGSC0003DMT400060697 | Potato | cytosol | 73.91 | 22.27 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 75.36 | 22.22 |
| CDY26150 | Canola | cytosol | 75.36 | 22.22 |
| Bra025895.1-P | Field mustard | cytosol | 75.36 | 22.22 |
| CDX96716 | Canola | cytosol | 75.36 | 22.22 |
| KRH43467 | Soybean | nucleus | 73.91 | 21.98 |
| CDX73042 | Canola | cytosol | 73.91 | 21.89 |
| CDY19222 | Canola | cytosol | 73.91 | 21.79 |
| KRH43314 | Soybean | nucleus | 72.46 | 21.55 |
| AT1G18540.1 | Thale cress | cytosol | 72.46 | 21.46 |
| PGSC0003DMT400021753 | Potato | cytosol | 71.01 | 21.4 |
| CDX83840 | Canola | cytosol | 72.46 | 21.37 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 71.01 | 21.21 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 71.01 | 21.12 |
| Solyc05g054070.2.1 | Tomato | nucleus | 69.57 | 20.96 |
| KRH59450 | Soybean | endoplasmic reticulum | 72.46 | 20.66 |
| Bra016555.1-P | Field mustard | cytosol | 69.57 | 20.51 |
| Zm00001d041756_P001 | Maize | plastid | 79.71 | 13.03 |
Protein Annotations
| MapMan:17.1.2.1.4 | InterPro:60S_ribosomal_L6E | UniProt:A0A1D6PTK1 | ProteinID:AQK49960.1 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| PFAM:PF01159 | PANTHER:PTHR10715 | PANTHER:PTHR10715:SF3 | UniParc:UPI000220E611 | EnsemblPlantsGene:Zm00001d049263 | EnsemblPlants:Zm00001d049263_P001 |
| EnsemblPlants:Zm00001d049263_T001 | SEG:seg | : | : | : | : |
Description
60S ribosomal protein L6-3
Coordinates
chr4:+:23503112..23503470
Molecular Weight (calculated)
7882.5 Da
IEP (calculated)
5.049
GRAVY (calculated)
-0.383
Length
69 amino acids
Sequence
(BLAST)
(BLAST)
1: MKVDISGVNV EKFDDKYFAT KDLPQLKKDD QKAVDAELIK AIEVVPNLKT YLGAWFSLRD GDKPHEIVF
001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.