Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
mitochondrion: 28499913 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G74050.1 | KRH22291 | AT2G42580.1 | 19000166 |
| AT1G74050.1 | KRH27037 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH43467 | Soybean | nucleus | 97.41 | 97.41 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 90.09 | 90.09 |
| KRH43314 | Soybean | nucleus | 89.66 | 89.66 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 88.36 | 88.74 |
| KRH59450 | Soybean | endoplasmic reticulum | 90.09 | 86.36 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 83.19 | 82.83 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 71.98 | 80.68 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 71.12 | 79.71 |
| PGSC0003DMT400034524 | Potato | cytosol | 78.45 | 79.48 |
| CDY11078 | Canola | cytosol | 70.26 | 79.13 |
| Solyc11g012110.1.1 | Tomato | nucleus | 78.02 | 79.04 |
| Solyc05g054070.2.1 | Tomato | nucleus | 78.02 | 79.04 |
| AT1G74060.1 | Thale cress | cytosol | 79.31 | 78.97 |
| Bra015940.1-P | Field mustard | cytosol | 79.31 | 78.97 |
| Solyc04g014720.2.1 | Tomato | nucleus | 77.59 | 78.6 |
| AT1G18540.1 | Thale cress | cytosol | 78.88 | 78.54 |
| CDX96510 | Canola | cytosol | 78.88 | 78.54 |
| AT1G74050.1 | Thale cress | cytosol | 78.88 | 78.54 |
| CDY26150 | Canola | cytosol | 78.88 | 78.21 |
| CDX81879 | Canola | extracellular | 78.88 | 78.21 |
| PGSC0003DMT400060697 | Potato | cytosol | 77.16 | 78.17 |
| PGSC0003DMT400021753 | Potato | cytosol | 77.16 | 78.17 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 78.45 | 77.78 |
| CDX96716 | Canola | cytosol | 78.45 | 77.78 |
| Bra031034.1-P | Field mustard | cytosol | 78.45 | 77.78 |
| CDY66361 | Canola | cytosol | 78.02 | 77.68 |
| Bra008128.1-P | Field mustard | cytosol | 78.02 | 77.68 |
| CDY19222 | Canola | cytosol | 78.02 | 77.35 |
| Bra025895.1-P | Field mustard | cytosol | 78.02 | 77.35 |
| CDY21701 | Canola | cytosol | 77.59 | 76.92 |
| CDX83840 | Canola | cytosol | 77.59 | 76.92 |
| Bra016555.1-P | Field mustard | cytosol | 77.16 | 76.5 |
| CDY45859 | Canola | cytosol | 76.29 | 76.29 |
| CDX73042 | Canola | cytosol | 75.86 | 75.54 |
| Zm00001d049263_P001 | Maize | cytosol | 22.41 | 75.36 |
| EES12351 | Sorghum | mitochondrion | 68.1 | 72.15 |
| Zm00001d050920_P002 | Maize | plastid | 65.95 | 69.86 |
| Zm00001d017047_P001 | Maize | plastid | 65.52 | 69.41 |
| Zm00001d050921_P002 | Maize | plastid | 65.52 | 69.41 |
| EES07070 | Sorghum | mitochondrion | 65.52 | 69.41 |
| Os04t0473400-01 | Rice | nucleus, plastid | 66.38 | 69.37 |
| Os02t0591700-01 | Rice | nucleus | 64.66 | 68.49 |
| TraesCS6A01G204900.1 | Wheat | mitochondrion | 62.93 | 66.67 |
| TraesCS6B01G225600.1 | Wheat | mitochondrion | 62.93 | 66.67 |
| TraesCS6D01G190100.1 | Wheat | nucleus | 62.93 | 66.67 |
| HORVU6Hr1G041750.1 | Barley | mitochondrion | 61.64 | 60.08 |
| TraesCS6D01G180100.1 | Wheat | mitochondrion | 62.93 | 58.87 |
| TraesCS6B01G230300.2 | Wheat | mitochondrion | 62.07 | 58.06 |
| HORVU6Hr1G052600.3 | Barley | plastid | 61.64 | 54.79 |
| Zm00001d025591_P001 | Maize | cytosol | 42.67 | 43.81 |
| Zm00001d041756_P001 | Maize | plastid | 43.53 | 23.93 |
Protein Annotations
| EntrezGene:100784101 | MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | EMBL:ACUP02009798 | EnsemblPlantsGene:GLYMA_15G271300 |
| GO:GO:0000027 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0022625 | UniProt:I1MJL6 | InterPro:IPR014722 |
| EnsemblPlants:KRH13901 | ProteinID:KRH13901 | ProteinID:KRH13901.1 | PFAM:PF01159 | PFAM:PF03868 | PANTHER:PTHR10715 |
| InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L6_N | SUPFAM:SSF50104 | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI000233BFE0 | SEG:seg |
Description
hypothetical protein
Coordinates
chr15:+:50857790..50860117
Molecular Weight (calculated)
25932.9 Da
IEP (calculated)
10.873
GRAVY (calculated)
-0.664
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKKPRTTT RNPDLVRGIG KYSRSQMYHK RGIWAIKAKN GGVLPRHDPK PKPEAPAQKP PKFYPADDVK KPLVNKHKPK PAKLRASITP GTVLILLAGR
101: FKGKRVVFLK QLPSGLLLVT GPFKINGVPL RRVNQSYVIG TSTKVDISGV NVDKFDDKYF AKEAKKKKTK GEGEFFEAEK EEKNVLPQEK KDDQKTVDTT
201: LLKAIENVPD LKSYLGARFS LKAGVKPHEL VF
101: FKGKRVVFLK QLPSGLLLVT GPFKINGVPL RRVNQSYVIG TSTKVDISGV NVDKFDDKYF AKEAKKKKTK GEGEFFEAEK EEKNVLPQEK KDDQKTVDTT
201: LLKAIENVPD LKSYLGARFS LKAGVKPHEL VF
001: MPAKQRTAKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPAKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQG KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQG KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6B60S ribosomal protein L6-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.