Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031034.1-P | Field mustard | cytosol | 98.72 | 98.72 |
| CDX81879 | Canola | extracellular | 97.86 | 97.86 |
| CDY19222 | Canola | cytosol | 95.73 | 95.73 |
| CDY26150 | Canola | cytosol | 95.73 | 95.73 |
| CDX83840 | Canola | cytosol | 94.02 | 94.02 |
| CDX96716 | Canola | cytosol | 93.16 | 93.16 |
| CDX96510 | Canola | cytosol | 92.31 | 92.7 |
| CDY66361 | Canola | cytosol | 91.88 | 92.27 |
| AT1G18540.1 | Thale cress | cytosol | 91.45 | 91.85 |
| CDY45859 | Canola | cytosol | 90.6 | 91.38 |
| CDY11078 | Canola | cytosol | 80.34 | 91.26 |
| CDX73042 | Canola | cytosol | 88.89 | 89.27 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 81.2 | 81.55 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 78.63 | 79.65 |
| PGSC0003DMT400034524 | Potato | cytosol | 76.92 | 78.6 |
| KRH43467 | Soybean | nucleus | 77.78 | 78.45 |
| KRH43314 | Soybean | nucleus | 77.78 | 78.45 |
| Zm00001d049263_P001 | Maize | cytosol | 23.08 | 78.26 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 77.35 | 78.02 |
| Solyc11g012110.1.1 | Tomato | nucleus | 76.07 | 77.73 |
| Solyc04g014720.2.1 | Tomato | nucleus | 76.07 | 77.73 |
| KRH13901 | Soybean | nucleus | 76.92 | 77.59 |
| PGSC0003DMT400060697 | Potato | cytosol | 75.64 | 77.29 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 67.95 | 76.81 |
| KRH59450 | Soybean | endoplasmic reticulum | 78.63 | 76.03 |
| Solyc05g054070.2.1 | Tomato | nucleus | 74.36 | 75.98 |
| PGSC0003DMT400021753 | Potato | cytosol | 74.36 | 75.98 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 67.09 | 75.85 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 71.79 | 71.79 |
| EES07070 | Sorghum | mitochondrion | 64.96 | 69.41 |
| EES12351 | Sorghum | mitochondrion | 64.96 | 69.41 |
| Zm00001d050920_P002 | Maize | plastid | 64.96 | 69.41 |
| Zm00001d017047_P001 | Maize | plastid | 64.53 | 68.95 |
| Zm00001d050921_P002 | Maize | plastid | 64.53 | 68.95 |
| Os04t0473400-01 | Rice | nucleus, plastid | 64.96 | 68.47 |
| TraesCS6D01G190100.1 | Wheat | nucleus | 61.97 | 66.21 |
| TraesCS6A01G204900.1 | Wheat | mitochondrion | 61.97 | 66.21 |
| Os02t0591700-01 | Rice | nucleus | 61.97 | 66.21 |
| TraesCS6B01G225600.1 | Wheat | mitochondrion | 61.54 | 65.75 |
| HORVU6Hr1G041750.1 | Barley | mitochondrion | 57.69 | 56.72 |
| HORVU6Hr1G052600.3 | Barley | plastid | 62.82 | 56.32 |
| TraesCS6B01G230300.2 | Wheat | mitochondrion | 58.97 | 55.65 |
| TraesCS6D01G180100.1 | Wheat | mitochondrion | 58.97 | 55.65 |
| Zm00001d025591_P001 | Maize | cytosol | 43.16 | 44.69 |
| Zm00001d041756_P001 | Maize | plastid | 43.16 | 23.93 |
Protein Annotations
| MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | GO:A0A078G8J0 | UniProt:A0A078G8J0 | EnsemblPlants:CDY21701 |
| ProteinID:CDY21701 | ProteinID:CDY21701.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00016195001 | InterPro:IPR014722 |
| PFAM:PF01159 | PFAM:PF03868 | PANTHER:PTHR10715 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L6_N | SUPFAM:SSF50104 |
| InterPro:Translation_prot_SH3-like_sf | UniParc:UPI0004EEBC57 | SEG:seg | : | : | : |
Description
BnaA09g44520DBnaA09g44520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8J0]
Coordinates
chrLK032123:+:297929..299328
Molecular Weight (calculated)
26106.0 Da
IEP (calculated)
10.853
GRAVY (calculated)
-0.574
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAAKQRTPK VSRNPDLIRG VGKYSRSQMY HKRGLWAIKA KNGGVFPRHD AKSKVDSPVE KPAKFYPAED VKKPLANRRK PKPTKLKSSI TPGTVLIILA
101: GRFKGKRVVF LKQLSSGLLL VTGPFKINGV PLRRVNQSYV IGTSTKVDIS GVSVEKFDDK YFGKVAEKKN KKGEGEFFEA EKEVKKEIPQ EKKEDQKAVD
201: AALIKAIESV PELKTYLGAR FSLSQGMKPH ELVF
101: GRFKGKRVVF LKQLSSGLLL VTGPFKINGV PLRRVNQSYV IGTSTKVDIS GVSVEKFDDK YFGKVAEKKN KKGEGEFFEA EKEVKKEIPQ EKKEDQKAVD
201: AALIKAIESV PELKTYLGAR FSLSQGMKPH ELVF
001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.