Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G093390.2 | |
| HORVU3Hr1G027650.2 | |
| HORVU3Hr1G054240.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G74050.1 | HORVU1Hr1G093390.2 | AT2G42580.1 | 19000166 |
| AT1G74050.1 | HORVU3Hr1G027650.2 | AT2G42580.1 | 19000166 |
| AT1G74050.1 | HORVU3Hr1G054240.2 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G190100.1 | Wheat | nucleus | 79.69 | 94.98 |
| TraesCS6B01G225600.1 | Wheat | mitochondrion | 79.69 | 94.98 |
| TraesCS6A01G204900.1 | Wheat | mitochondrion | 79.69 | 94.98 |
| Os02t0591700-01 | Rice | nucleus | 75.86 | 90.41 |
| EES07070 | Sorghum | mitochondrion | 72.03 | 85.84 |
| Zm00001d050920_P002 | Maize | plastid | 71.26 | 84.93 |
| Zm00001d050921_P002 | Maize | plastid | 70.88 | 84.47 |
| Zm00001d017047_P001 | Maize | plastid | 70.88 | 84.47 |
| HORVU6Hr1G041750.1 | Barley | mitochondrion | 74.33 | 81.51 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 58.24 | 73.43 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 57.47 | 72.46 |
| CDY11078 | Canola | cytosol | 52.87 | 66.99 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 57.47 | 64.1 |
| Solyc11g012110.1.1 | Tomato | nucleus | 55.94 | 63.76 |
| PGSC0003DMT400034524 | Potato | cytosol | 55.94 | 63.76 |
| AT1G74050.1 | Thale cress | cytosol | 56.32 | 63.09 |
| CDY21701 | Canola | cytosol | 56.32 | 62.82 |
| AT1G74060.1 | Thale cress | cytosol | 55.94 | 62.66 |
| Solyc04g014720.2.1 | Tomato | nucleus | 54.79 | 62.45 |
| CDY26150 | Canola | cytosol | 55.94 | 62.39 |
| Bra031034.1-P | Field mustard | cytosol | 55.94 | 62.39 |
| Bra015940.1-P | Field mustard | cytosol | 55.56 | 62.23 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 55.56 | 62.23 |
| PGSC0003DMT400060697 | Potato | cytosol | 54.41 | 62.01 |
| CDX81879 | Canola | extracellular | 55.56 | 61.97 |
| CDY19222 | Canola | cytosol | 55.56 | 61.97 |
| CDX96716 | Canola | cytosol | 55.56 | 61.97 |
| Bra008128.1-P | Field mustard | cytosol | 55.17 | 61.8 |
| AT1G18540.1 | Thale cress | cytosol | 55.17 | 61.8 |
| CDX96510 | Canola | cytosol | 55.17 | 61.8 |
| KRH13901 | Soybean | nucleus | 54.79 | 61.64 |
| Bra025895.1-P | Field mustard | cytosol | 55.17 | 61.54 |
| CDY66361 | Canola | cytosol | 54.79 | 61.37 |
| CDY45859 | Canola | cytosol | 54.41 | 61.21 |
| Solyc05g054070.2.1 | Tomato | nucleus | 53.64 | 61.14 |
| Bra016555.1-P | Field mustard | cytosol | 54.79 | 61.11 |
| CDX83840 | Canola | cytosol | 54.79 | 61.11 |
| KRH43467 | Soybean | nucleus | 54.02 | 60.78 |
| KRH43314 | Soybean | nucleus | 54.02 | 60.78 |
| PGSC0003DMT400021753 | Potato | cytosol | 53.26 | 60.7 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 53.26 | 60.17 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 53.26 | 59.91 |
| CDX73042 | Canola | cytosol | 52.87 | 59.23 |
| KRH59450 | Soybean | endoplasmic reticulum | 53.26 | 57.44 |
| Zm00001d025591_P001 | Maize | cytosol | 41.76 | 48.23 |
| Zm00001d041756_P001 | Maize | plastid | 44.83 | 27.73 |
Protein Annotations
| MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | UniProt:A0A287U642 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | EnsemblPlantsGene:HORVU6Hr1G052600 | EnsemblPlants:HORVU6Hr1G052600.3 | InterPro:IPR014722 | PFAM:PF01159 | PANTHER:PTHR10715 |
| PANTHER:PTHR10715:SF3 | InterPro:Rib_L2_dom2 | SUPFAM:SSF50104 | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI000B471749 | SEG:seg |
Description
No Description!
Coordinates
chrchr6H:-:325194479..325196297
Molecular Weight (calculated)
28900.1 Da
IEP (calculated)
10.927
GRAVY (calculated)
-0.592
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: PSTSTPPHTY KHATKPHRPF FPAAASSLLQ PKRPHASTQG IPMAPTSKMA LGIKRASRSH SYHRRGLWAI KAKNGGAFPK AEKPAAVAEP KFYPADDVKP
101: RTASTRKPKP TKLRSTITPG TVLILLAGRY MGKRVVFLKQ LKSGLLLITG PFKINGVPVR RVNQAYVIAT STKVDISGVK VEKFDDKYFA RDKKARAKKT
201: EGELFETEKE ATKNLPDFKK DDQKAIDAEL IKAIDAVPDL KNYLGARFSL RDGDKPHEMT F
101: RTASTRKPKP TKLRSTITPG TVLILLAGRY MGKRVVFLKQ LKSGLLLITG PFKINGVPVR RVNQAYVIAT STKVDISGVK VEKFDDKYFA RDKKARAKKT
201: EGELFETEKE ATKNLPDFKK DDQKAIDAEL IKAIDAVPDL KNYLGARFSL RDGDKPHEMT F
001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.