Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P22280_001 | Banana | cytosol | 88.89 | 88.89 |
| Zm00001d049263_P001 | Maize | cytosol | 25.6 | 76.81 |
| CDY11078 | Canola | cytosol | 75.85 | 76.21 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 85.99 | 76.07 |
| KRH13901 | Soybean | nucleus | 80.68 | 71.98 |
| Zm00001d050920_P002 | Maize | plastid | 75.85 | 71.69 |
| EES12351 | Sorghum | mitochondrion | 75.85 | 71.69 |
| Zm00001d050921_P002 | Maize | plastid | 75.36 | 71.23 |
| Zm00001d017047_P001 | Maize | plastid | 75.36 | 71.23 |
| EES07070 | Sorghum | mitochondrion | 75.36 | 71.23 |
| KRH43467 | Soybean | nucleus | 79.71 | 71.12 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 79.71 | 70.82 |
| CDX96510 | Canola | cytosol | 78.26 | 69.53 |
| Bra015940.1-P | Field mustard | cytosol | 78.26 | 69.53 |
| Os02t0591700-01 | Rice | nucleus | 73.43 | 69.41 |
| Os04t0473400-01 | Rice | nucleus, plastid | 74.4 | 69.37 |
| AT1G74050.1 | Thale cress | cytosol | 77.78 | 69.1 |
| Solyc11g012110.1.1 | Tomato | nucleus | 76.33 | 69.0 |
| Solyc04g014720.2.1 | Tomato | nucleus | 76.33 | 69.0 |
| PGSC0003DMT400034524 | Potato | cytosol | 76.33 | 69.0 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 77.29 | 68.97 |
| KRH43314 | Soybean | nucleus | 77.29 | 68.97 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 76.81 | 68.83 |
| CDY66361 | Canola | cytosol | 77.29 | 68.67 |
| AT1G74060.1 | Thale cress | cytosol | 77.29 | 68.67 |
| Bra008128.1-P | Field mustard | cytosol | 77.29 | 68.67 |
| PGSC0003DMT400060697 | Potato | cytosol | 75.85 | 68.56 |
| TraesCS6A01G204900.1 | Wheat | mitochondrion | 72.46 | 68.49 |
| TraesCS6D01G190100.1 | Wheat | nucleus | 72.46 | 68.49 |
| CDY26150 | Canola | cytosol | 77.29 | 68.38 |
| TraesCS6B01G225600.1 | Wheat | mitochondrion | 71.98 | 68.04 |
| CDX81879 | Canola | extracellular | 76.81 | 67.95 |
| CDY21701 | Canola | cytosol | 76.81 | 67.95 |
| PGSC0003DMT400021753 | Potato | cytosol | 74.88 | 67.69 |
| Solyc05g054070.2.1 | Tomato | nucleus | 74.88 | 67.69 |
| CDY45859 | Canola | cytosol | 75.85 | 67.67 |
| CDX96716 | Canola | cytosol | 76.33 | 67.52 |
| Bra031034.1-P | Field mustard | cytosol | 76.33 | 67.52 |
| CDY19222 | Canola | cytosol | 76.33 | 67.52 |
| AT1G18540.1 | Thale cress | cytosol | 75.85 | 67.38 |
| Bra025895.1-P | Field mustard | cytosol | 75.85 | 67.09 |
| CDX83840 | Canola | cytosol | 75.85 | 67.09 |
| KRH59450 | Soybean | endoplasmic reticulum | 77.78 | 66.53 |
| Bra016555.1-P | Field mustard | cytosol | 74.88 | 66.24 |
| CDX73042 | Canola | cytosol | 74.4 | 66.09 |
| HORVU6Hr1G041750.1 | Barley | mitochondrion | 69.08 | 60.08 |
| TraesCS6D01G180100.1 | Wheat | mitochondrion | 70.05 | 58.47 |
| TraesCS6B01G230300.2 | Wheat | mitochondrion | 69.57 | 58.06 |
| HORVU6Hr1G052600.3 | Barley | plastid | 72.46 | 57.47 |
| Zm00001d025591_P001 | Maize | cytosol | 50.24 | 46.02 |
| Zm00001d041756_P001 | Maize | plastid | 49.76 | 24.41 |
Protein Annotations
| MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr3G28460_001 |
| EnsemblPlants:GSMUA_Achr3P28460_001 | EnsemblPlants:GSMUA_Achr3T28460_001 | InterPro:IPR014722 | UniProt:M0SIL2 | PFAM:PF01159 | PANTHER:PTHR10715 |
| PANTHER:PTHR10715:SF3 | InterPro:Rib_L2_dom2 | SUPFAM:SSF50104 | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI000294F2EB | SEG:seg |
Description
60S ribosomal protein L6 [Source:GMGC_GENE;Acc:GSMUA_Achr3G28460_001]
Coordinates
chr3:-:27757617..27760091
Molecular Weight (calculated)
23062.1 Da
IEP (calculated)
10.678
GRAVY (calculated)
-0.600
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MYHKRGIWAI KAKNGGSFPH HDPKPAEPAQ SSAKPPKFYP ADDVKTPIPN RRKPKPTKLR ASITPGTVLI LLAGRFMGKR VVFLKQLPSG LLLVTGPFKI
101: NGVPLRRVNQ SYVVATSTKV DISGVNADKF HDKYFAKEKK EKTKKGEGEF FETEKEETKS LPQEKKDDQK AVDGPLIKAI EAVPDLKAYL GARFSLRSGM
201: KPHELVF
101: NGVPLRRVNQ SYVVATSTKV DISGVNADKF HDKYFAKEKK EKTKKGEGEF FETEKEETKS LPQEKKDDQK AVDGPLIKAI EAVPDLKAYL GARFSLRSGM
201: KPHELVF
001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.