Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G230300.2 | Wheat | mitochondrion | 95.56 | 95.56 |
| TraesCS6D01G190100.1 | Wheat | nucleus | 82.26 | 93.15 |
| HORVU6Hr1G041750.1 | Barley | mitochondrion | 88.71 | 92.44 |
| Os02t0591700-01 | Rice | nucleus | 77.82 | 88.13 |
| EES07070 | Sorghum | mitochondrion | 75.4 | 85.39 |
| Zm00001d017047_P001 | Maize | plastid | 74.19 | 84.02 |
| Zm00001d050921_P002 | Maize | plastid | 73.79 | 83.56 |
| Zm00001d050920_P002 | Maize | plastid | 73.79 | 83.56 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 60.89 | 72.95 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 58.47 | 70.05 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 62.1 | 65.81 |
| Solyc11g012110.1.1 | Tomato | nucleus | 58.87 | 63.76 |
| CDY11078 | Canola | cytosol | 52.82 | 63.59 |
| PGSC0003DMT400034524 | Potato | cytosol | 58.47 | 63.32 |
| KRH13901 | Soybean | nucleus | 58.87 | 62.93 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 58.87 | 62.66 |
| KRH43467 | Soybean | nucleus | 58.47 | 62.5 |
| KRH43314 | Soybean | nucleus | 58.47 | 62.5 |
| Solyc04g014720.2.1 | Tomato | nucleus | 57.26 | 62.01 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 57.66 | 61.64 |
| Solyc05g054070.2.1 | Tomato | nucleus | 56.85 | 61.57 |
| PGSC0003DMT400060697 | Potato | cytosol | 56.85 | 61.57 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 57.26 | 61.47 |
| PGSC0003DMT400021753 | Potato | cytosol | 56.05 | 60.7 |
| AT1G74050.1 | Thale cress | cytosol | 56.85 | 60.52 |
| AT1G18540.1 | Thale cress | cytosol | 56.45 | 60.09 |
| AT1G74060.1 | Thale cress | cytosol | 56.45 | 60.09 |
| CDX96716 | Canola | cytosol | 56.45 | 59.83 |
| CDY26150 | Canola | cytosol | 56.45 | 59.83 |
| CDY19222 | Canola | cytosol | 56.05 | 59.4 |
| Bra015940.1-P | Field mustard | cytosol | 55.65 | 59.23 |
| KRH59450 | Soybean | endoplasmic reticulum | 57.66 | 59.09 |
| Bra025895.1-P | Field mustard | cytosol | 55.65 | 58.97 |
| CDY21701 | Canola | cytosol | 55.65 | 58.97 |
| Bra031034.1-P | Field mustard | cytosol | 55.65 | 58.97 |
| CDX81879 | Canola | extracellular | 55.65 | 58.97 |
| CDX96510 | Canola | cytosol | 55.24 | 58.8 |
| Bra016555.1-P | Field mustard | cytosol | 55.24 | 58.55 |
| CDX83840 | Canola | cytosol | 55.24 | 58.55 |
| CDY66361 | Canola | cytosol | 54.84 | 58.37 |
| Bra008128.1-P | Field mustard | cytosol | 54.84 | 58.37 |
| CDY45859 | Canola | cytosol | 54.44 | 58.19 |
| CDX73042 | Canola | cytosol | 52.82 | 56.22 |
| Zm00001d025591_P001 | Maize | cytosol | 43.95 | 48.23 |
| Zm00001d041756_P001 | Maize | plastid | 45.16 | 26.54 |
Protein Annotations
| MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR014722 |
| PFAM:PF01159 | ScanProsite:PS01170 | PANTHER:PTHR10715 | PANTHER:PTHR10715:SF3 | InterPro:Rib_L2_dom2 | SUPFAM:SSF50104 |
| EnsemblPlantsGene:TraesCS6D01G180100 | EnsemblPlants:TraesCS6D01G180100.1 | InterPro:Translation_prot_SH3-like_sf | TIGR:cd13156 | SEG:seg | : |
Description
No Description!
Coordinates
chr6D:-:198601725..198603286
Molecular Weight (calculated)
27785.0 Da
IEP (calculated)
10.577
GRAVY (calculated)
-0.322
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTSKMALG IKRASRSHTY HRRGLWAIKA KHGGALPKAE KPAAVAEPKF YPADDVKPRT VSTRKPHPTK LRSTITPGTV LILLAGRYMG KRVVFLKQLQ
101: SGLLLITGPF KINGVPIRRV NQAYVIATST KVDISKVNVQ KFDDKYFARE KKTRAKKTEG ELFESDKEVH SCIIILLDAL YPSCSNTLFY IFSVTLQATK
201: NLPDFKKDDQ KVIDAELIKA IDAVPDLKNY LGARFSLRDG DKPHEMTF
101: SGLLLITGPF KINGVPIRRV NQAYVIATST KVDISKVNVQ KFDDKYFARE KKTRAKKTEG ELFESDKEVH SCIIILLDAL YPSCSNTLFY IFSVTLQATK
201: NLPDFKKDDQ KVIDAELIKA IDAVPDLKNY LGARFSLRDG DKPHEMTF
001: MPAAKRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA QPKVDAPVEK PAKFYPAEDV KKPLVNRRKP KPTKLKASIT PGTVLIILAG
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF
Arabidopsis Description
RPL6A60S ribosomal protein L6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ76]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.