Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000267.1-P | |
| Bra004709.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G74050.1 | Bra000267.1-P | AT2G42580.1 | 19000166 |
| AT1G74050.1 | Bra004709.1-P | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96510 | Canola | cytosol | 99.57 | 99.57 |
| CDX73042 | Canola | cytosol | 95.28 | 95.28 |
| AT1G74060.1 | Thale cress | cytosol | 93.13 | 93.13 |
| Bra008128.1-P | Field mustard | cytosol | 92.7 | 92.7 |
| AT1G74050.1 | Thale cress | cytosol | 92.7 | 92.7 |
| Bra031034.1-P | Field mustard | cytosol | 92.27 | 91.88 |
| Bra025895.1-P | Field mustard | cytosol | 90.56 | 90.17 |
| Bra016555.1-P | Field mustard | cytosol | 87.98 | 87.61 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 81.97 | 81.97 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 79.4 | 80.09 |
| KRH43467 | Soybean | nucleus | 79.4 | 79.74 |
| PGSC0003DMT400034524 | Potato | cytosol | 78.11 | 79.48 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 78.97 | 79.31 |
| KRH13901 | Soybean | nucleus | 78.97 | 79.31 |
| KRH43314 | Soybean | nucleus | 78.97 | 79.31 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 69.53 | 78.26 |
| Solyc11g012110.1.1 | Tomato | nucleus | 76.39 | 77.73 |
| Solyc04g014720.2.1 | Tomato | nucleus | 75.97 | 77.29 |
| KRH59450 | Soybean | endoplasmic reticulum | 80.26 | 77.27 |
| PGSC0003DMT400060697 | Potato | cytosol | 75.54 | 76.86 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 68.24 | 76.81 |
| Zm00001d049263_P001 | Maize | cytosol | 22.75 | 76.81 |
| PGSC0003DMT400021753 | Potato | cytosol | 74.25 | 75.55 |
| Solyc05g054070.2.1 | Tomato | nucleus | 73.39 | 74.67 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 73.82 | 73.5 |
| Zm00001d050920_P002 | Maize | plastid | 66.95 | 71.23 |
| EES07070 | Sorghum | mitochondrion | 66.95 | 71.23 |
| Zm00001d050921_P002 | Maize | plastid | 66.52 | 70.78 |
| Zm00001d017047_P001 | Maize | plastid | 66.52 | 70.78 |
| EES12351 | Sorghum | mitochondrion | 64.81 | 68.95 |
| Os04t0473400-01 | Rice | nucleus, plastid | 65.24 | 68.47 |
| Os02t0591700-01 | Rice | nucleus | 63.09 | 67.12 |
| TraesCS6A01G204900.1 | Wheat | mitochondrion | 62.66 | 66.67 |
| TraesCS6D01G190100.1 | Wheat | nucleus | 62.66 | 66.67 |
| TraesCS6B01G225600.1 | Wheat | mitochondrion | 62.23 | 66.21 |
| HORVU6Hr1G041750.1 | Barley | mitochondrion | 58.37 | 57.14 |
| TraesCS6D01G180100.1 | Wheat | mitochondrion | 59.23 | 55.65 |
| TraesCS6B01G230300.2 | Wheat | mitochondrion | 59.23 | 55.65 |
| HORVU6Hr1G052600.3 | Barley | plastid | 62.23 | 55.56 |
| Zm00001d025591_P001 | Maize | cytosol | 42.92 | 44.25 |
| Zm00001d041756_P001 | Maize | plastid | 43.78 | 24.17 |
Protein Annotations
| MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | EnsemblPlantsGene:Bra015940 | EnsemblPlants:Bra015940.1 | EnsemblPlants:Bra015940.1-P |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR014722 | UniProt:M4DHG3 | PFAM:PF01159 | PFAM:PF03868 |
| PANTHER:PTHR10715 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L6_N | SUPFAM:SSF50104 | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI0002541E0C |
| SEG:seg | : | : | : | : | : |
Description
AT1G74060 (E=5e-107) | 60S ribosomal protein L6 (RPL6B)
Coordinates
chrA07:-:20123750..20124871
Molecular Weight (calculated)
25983.9 Da
IEP (calculated)
10.875
GRAVY (calculated)
-0.610
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAKERTAKV SRNPDLIRGI GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKADAPVEK PPKFYPAEDV KKPLANRRNP KPTKLRSSIT PGTVLIILAG
101: RFKGKRVVFL KQLPSGLLLV SGPFKINGVP LRRVNQSYVI GTSTKVDISG VSLDKFDDKY FGKVAEKKNK KGEGEFFQAE KEEKKEIPQG KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLPSGLLLV SGPFKINGVP LRRVNQSYVI GTSTKVDISG VSLDKFDDKY FGKVAEKKNK KGEGEFFQAE KEEKKEIPQG KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
001: MPAKQRTAKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPAKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQG KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQG KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6B60S ribosomal protein L6-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.