Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- mitochondrion 2
- nucleus 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc05g054070.2.1 | Tomato | nucleus | 97.82 | 97.82 |
PGSC0003DMT400034524 | Potato | cytosol | 90.39 | 90.39 |
PGSC0003DMT400060697 | Potato | cytosol | 88.65 | 88.65 |
VIT_08s0007g06150.t01 | Wine grape | cytosol | 82.1 | 81.39 |
KRH43467 | Soybean | nucleus | 79.04 | 78.02 |
KRH43314 | Soybean | nucleus | 78.6 | 77.59 |
KRH13901 | Soybean | nucleus | 78.17 | 77.16 |
KRH59448 | Soybean | endoplasmic reticulum, nucleus | 77.73 | 76.72 |
KRH43315 | Soybean | endoplasmic reticulum, nucleus | 77.29 | 76.62 |
CDY11078 | Canola | cytosol | 68.56 | 76.21 |
GSMUA_Achr9P22280_001 | Banana | cytosol | 68.12 | 75.36 |
Bra008128.1-P | Field mustard | cytosol | 76.42 | 75.11 |
CDY66361 | Canola | cytosol | 76.42 | 75.11 |
GSMUA_Achr3P28460_001 | Banana | cytosol | 67.69 | 74.88 |
AT1G74050.1 | Thale cress | cytosol | 75.98 | 74.68 |
AT1G18540.1 | Thale cress | cytosol | 75.98 | 74.68 |
CDX96510 | Canola | cytosol | 75.98 | 74.68 |
CDY45859 | Canola | cytosol | 75.55 | 74.57 |
CDY21701 | Canola | cytosol | 75.98 | 74.36 |
AT1G74060.1 | Thale cress | cytosol | 75.55 | 74.25 |
Bra015940.1-P | Field mustard | cytosol | 75.55 | 74.25 |
CDX81879 | Canola | extracellular | 75.55 | 73.93 |
Bra031034.1-P | Field mustard | cytosol | 75.55 | 73.93 |
CDY26150 | Canola | cytosol | 75.55 | 73.93 |
CDX96716 | Canola | cytosol | 75.55 | 73.93 |
CDX83840 | Canola | cytosol | 75.11 | 73.5 |
CDY19222 | Canola | cytosol | 75.11 | 73.5 |
Bra016555.1-P | Field mustard | cytosol | 75.11 | 73.5 |
Bra025895.1-P | Field mustard | cytosol | 74.67 | 73.08 |
KRH59450 | Soybean | endoplasmic reticulum | 76.86 | 72.73 |
GSMUA_Achr4P06390_001 | Banana | mitochondrion | 74.24 | 72.65 |
CDX73042 | Canola | cytosol | 72.93 | 71.67 |
Zm00001d049263_P001 | Maize | cytosol | 21.4 | 71.01 |
Zm00001d017047_P001 | Maize | plastid | 65.5 | 68.49 |
EES07070 | Sorghum | mitochondrion | 64.63 | 67.58 |
EES12351 | Sorghum | mitochondrion | 64.19 | 67.12 |
Zm00001d050920_P002 | Maize | plastid | 63.76 | 66.67 |
Os04t0473400-01 | Rice | nucleus, plastid | 64.63 | 66.67 |
Zm00001d050921_P002 | Maize | plastid | 63.32 | 66.21 |
Os02t0591700-01 | Rice | nucleus | 62.01 | 64.84 |
TraesCS6D01G190100.1 | Wheat | nucleus | 61.57 | 64.38 |
TraesCS6B01G225600.1 | Wheat | mitochondrion | 61.57 | 64.38 |
TraesCS6A01G204900.1 | Wheat | mitochondrion | 61.57 | 64.38 |
TraesCS6D01G180100.1 | Wheat | mitochondrion | 60.7 | 56.05 |
HORVU6Hr1G041750.1 | Barley | mitochondrion | 57.64 | 55.46 |
TraesCS6B01G230300.2 | Wheat | mitochondrion | 59.83 | 55.24 |
HORVU6Hr1G052600.3 | Barley | plastid | 60.7 | 53.26 |
Zm00001d025591_P001 | Maize | cytosol | 41.92 | 42.48 |
Zm00001d041756_P001 | Maize | plastid | 42.79 | 23.22 |
Protein Annotations
EntrezGene:102594318 | MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | GO:GO:0003674 | GO:GO:0003735 |
GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
InterPro:IPR014722 | UniProt:M1AFN7 | PFAM:PF01159 | PFAM:PF03868 | EnsemblPlantsGene:PGSC0003DMG400008445 | PGSC:PGSC0003DMG400008445 |
EnsemblPlants:PGSC0003DMT400021753 | PANTHER:PTHR10715 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L6_N | SUPFAM:SSF50104 | InterPro:Translation_prot_SH3-like_sf |
UniParc:UPI0002954E91 | RefSeq:XP_006365859.1 | SEG:seg | : | : | : |
Description
60S ribosomal protein L6 [Source:PGSC_GENE;Acc:PGSC0003DMG400008445]
Coordinates
chr5:-:49736156..49738028
Molecular Weight (calculated)
25553.8 Da
IEP (calculated)
10.902
GRAVY (calculated)
-0.503
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAKKTIRNP ELIRGVGKFS RSKMYHKKGL WAIKKKNGGK LPLHEKKPAA TVAAVKPPKF YPADDVKKPL VNKHKPKPTK LRASITPGTV LIILAGRFKG
101: KRVVFLKQLT SGLLLVTGPF KLNGVPLRRV NQAYVIGTST KVDVSGVNVE KIDDKYFAKQ VEKKQKKGEG EFFEDKKEEK NVLPQEKKDE QKAVDAALLK
201: TIEGIPELKA YLSARFSLKS GMKPHELVF
101: KRVVFLKQLT SGLLLVTGPF KLNGVPLRRV NQAYVIGTST KVDVSGVNVE KIDDKYFAKQ VEKKQKKGEG EFFEDKKEEK NVLPQEKKDE QKAVDAALLK
201: TIEGIPELKA YLSARFSLKS GMKPHELVF
001: MPAAKRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA QPKVDAPVEK PAKFYPAEDV KKPLVNRRKP KPTKLKASIT PGTVLIILAG
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF
Arabidopsis Description
RPL6A60S ribosomal protein L6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ76]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.