Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G74050.1 | CDY42827 | AT2G42580.1 | 19000166 |
| AT1G74050.1 | CDY51514 | AT2G42580.1 | 19000166 |
| AT1G74050.1 | CDY55390 | AT2G42580.1 | 19000166 |
| AT1G74050.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008128.1-P | Field mustard | cytosol | 98.71 | 98.71 |
| CDY45859 | Canola | cytosol | 97.0 | 97.41 |
| CDX96510 | Canola | cytosol | 93.56 | 93.56 |
| CDY21701 | Canola | cytosol | 92.27 | 91.88 |
| AT1G74050.1 | Thale cress | cytosol | 91.42 | 91.42 |
| CDY11078 | Canola | cytosol | 80.69 | 91.26 |
| CDX81879 | Canola | extracellular | 91.42 | 91.03 |
| AT1G74060.1 | Thale cress | cytosol | 90.99 | 90.99 |
| CDY26150 | Canola | cytosol | 90.56 | 90.17 |
| CDX73042 | Canola | cytosol | 90.13 | 90.13 |
| CDY19222 | Canola | cytosol | 89.7 | 89.32 |
| CDX96716 | Canola | cytosol | 89.27 | 88.89 |
| CDX83840 | Canola | cytosol | 88.84 | 88.46 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 82.4 | 82.4 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 80.26 | 80.95 |
| KRH43467 | Soybean | nucleus | 78.54 | 78.88 |
| KRH43314 | Soybean | nucleus | 78.54 | 78.88 |
| PGSC0003DMT400034524 | Potato | cytosol | 76.82 | 78.17 |
| KRH13901 | Soybean | nucleus | 77.68 | 78.02 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 77.68 | 78.02 |
| Solyc11g012110.1.1 | Tomato | nucleus | 76.39 | 77.73 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 68.67 | 77.29 |
| Solyc04g014720.2.1 | Tomato | nucleus | 75.97 | 77.29 |
| KRH59450 | Soybean | endoplasmic reticulum | 80.26 | 77.27 |
| PGSC0003DMT400060697 | Potato | cytosol | 75.54 | 76.86 |
| Solyc05g054070.2.1 | Tomato | nucleus | 75.54 | 76.86 |
| PGSC0003DMT400021753 | Potato | cytosol | 75.11 | 76.42 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 67.81 | 76.33 |
| Zm00001d049263_P001 | Maize | cytosol | 22.32 | 75.36 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 73.39 | 73.08 |
| Zm00001d017047_P001 | Maize | plastid | 65.24 | 69.41 |
| Zm00001d050920_P002 | Maize | plastid | 65.24 | 69.41 |
| Zm00001d050921_P002 | Maize | plastid | 64.81 | 68.95 |
| EES07070 | Sorghum | mitochondrion | 64.81 | 68.95 |
| EES12351 | Sorghum | mitochondrion | 64.38 | 68.49 |
| Os04t0473400-01 | Rice | nucleus, plastid | 64.81 | 68.02 |
| Os02t0591700-01 | Rice | nucleus | 62.66 | 66.67 |
| TraesCS6A01G204900.1 | Wheat | mitochondrion | 61.8 | 65.75 |
| TraesCS6D01G190100.1 | Wheat | nucleus | 61.8 | 65.75 |
| TraesCS6B01G225600.1 | Wheat | mitochondrion | 61.37 | 65.3 |
| HORVU6Hr1G041750.1 | Barley | mitochondrion | 57.94 | 56.72 |
| TraesCS6B01G230300.2 | Wheat | mitochondrion | 58.37 | 54.84 |
| TraesCS6D01G180100.1 | Wheat | mitochondrion | 58.37 | 54.84 |
| HORVU6Hr1G052600.3 | Barley | plastid | 61.37 | 54.79 |
| Zm00001d025591_P001 | Maize | cytosol | 42.06 | 43.36 |
| Zm00001d041756_P001 | Maize | plastid | 42.06 | 23.22 |
Protein Annotations
| MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | GO:A0A078JKN0 | UniProt:A0A078JKN0 | EnsemblPlants:CDY66361 |
| ProteinID:CDY66361 | ProteinID:CDY66361.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00053460001 | InterPro:IPR014722 |
| PFAM:PF01159 | PFAM:PF03868 | PANTHER:PTHR10715 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L6_N | SUPFAM:SSF50104 |
| InterPro:Translation_prot_SH3-like_sf | UniParc:UPI0004EEC2B9 | SEG:seg | : | : | : |
Description
BnaAnng22110DBnaAnng22110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKN0]
Coordinates
chrLK035222:+:510..2186
Molecular Weight (calculated)
25949.8 Da
IEP (calculated)
10.918
GRAVY (calculated)
-0.593
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAKQRTPKV SRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAVAEK PPKFYPAEDV KKPLANRRKA NPTKLRSSIT PGTVLIILAG
101: RFKGKRVVFL KQLPSGLLLV SGPFKINGVP LRRVNQSYVI GTSTKVDVSG VSLEKFDDKY FGKVAEKKNK KGEGEFFEAE KEEKKAFPQG KKDDQKAVDG
201: ALIKAIESVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLPSGLLLV SGPFKINGVP LRRVNQSYVI GTSTKVDVSG VSLEKFDDKY FGKVAEKKNK KGEGEFFEAE KEEKKAFPQG KKDDQKAVDG
201: ALIKAIESVP ELKTYLGARF SLKQGMKPHE LVF
001: MPAAKRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA QPKVDAPVEK PAKFYPAEDV KKPLVNRRKP KPTKLKASIT PGTVLIILAG
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF
Arabidopsis Description
RPL6A60S ribosomal protein L6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ76]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.