Factsheet for PGSC0003DMT400034524

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012110.1.1	Tomato	nucleus	97.38	97.38
PGSC0003DMT400060697	Potato	cytosol	90.83	90.83
PGSC0003DMT400021753	Potato	cytosol	90.39	90.39
VIT_08s0007g06150.t01	Wine grape	cytosol	81.66	80.95
CDY11078	Canola	cytosol	71.18	79.13
KRH43467	Soybean	nucleus	79.91	78.88
CDX96510	Canola	cytosol	79.91	78.54
KRH59448	Soybean	endoplasmic reticulum, nucleus	79.48	78.45
KRH13901	Soybean	nucleus	79.48	78.45
AT1G74050.1	Thale cress	cytosol	79.48	78.11
Bra015940.1-P	Field mustard	cytosol	79.48	78.11
KRH43314	Soybean	nucleus	79.04	78.02
GSMUA_Achr9P22280_001	Banana	cytosol	70.31	77.78
AT1G74060.1	Thale cress	cytosol	79.04	77.68
KRH43315	Soybean	endoplasmic reticulum, nucleus	78.17	77.49
Bra008128.1-P	Field mustard	cytosol	78.6	77.25
CDY21701	Canola	cytosol	78.6	76.92
CDY26150	Canola	cytosol	78.6	76.92
CDY66361	Canola	cytosol	78.17	76.82
CDY19222	Canola	cytosol	78.17	76.5
Bra031034.1-P	Field mustard	cytosol	78.17	76.5
AT1G18540.1	Thale cress	cytosol	77.73	76.39
GSMUA_Achr3P28460_001	Banana	cytosol	69.0	76.33
CDX83840	Canola	cytosol	77.73	76.07
CDY45859	Canola	cytosol	76.86	75.86
Bra016555.1-P	Field mustard	cytosol	77.29	75.64
Bra025895.1-P	Field mustard	cytosol	77.29	75.64
CDX81879	Canola	extracellular	77.29	75.64
CDX96716	Canola	cytosol	77.29	75.64
CDX73042	Canola	cytosol	76.86	75.54
Zm00001d049263_P001	Maize	cytosol	22.71	75.36
KRH59450	Soybean	endoplasmic reticulum	78.6	74.38
GSMUA_Achr4P06390_001	Banana	mitochondrion	75.55	73.93
EES07070	Sorghum	mitochondrion	67.69	70.78
Zm00001d050920_P002	Maize	plastid	66.81	69.86
Zm00001d017047_P001	Maize	plastid	66.81	69.86
Zm00001d050921_P002	Maize	plastid	66.38	69.41
EES12351	Sorghum	mitochondrion	66.38	69.41
Os04t0473400-01	Rice	nucleus, plastid	66.81	68.92
Os02t0591700-01	Rice	nucleus	65.07	68.04
TraesCS6B01G225600.1	Wheat	mitochondrion	64.19	67.12
TraesCS6A01G204900.1	Wheat	mitochondrion	63.76	66.67
TraesCS6D01G190100.1	Wheat	nucleus	63.76	66.67
TraesCS6D01G180100.1	Wheat	mitochondrion	63.32	58.47
HORVU6Hr1G041750.1	Barley	mitochondrion	60.26	57.98
TraesCS6B01G230300.2	Wheat	mitochondrion	62.01	57.26
HORVU6Hr1G052600.3	Barley	plastid	63.76	55.94
Zm00001d025591_P001	Maize	cytosol	43.67	44.25
Zm00001d041756_P001	Maize	plastid	44.54	24.17

Protein Annotations

EntrezGene:102601402	MapMan:17.1.2.1.4	Gene3D:2.30.30.30	InterPro:60S_ribosomal_L6E	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR014722	UniProt:M1B0U4	PFAM:PF01159	PFAM:PF03868	EnsemblPlantsGene:PGSC0003DMG400013270	PGSC:PGSC0003DMG400013270
EnsemblPlants:PGSC0003DMT400034524	PANTHER:PTHR10715	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L6_N	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI000296186A	RefSeq:XP_006352371.1	SEG:seg	:	:	:

Description

60S ribosomal protein L6 [Source:PGSC_GENE;Acc:PGSC0003DMG400013270]

Coordinates

chr11:-:692925..694768

Molecular Weight (calculated)

25335.3 Da

IEP (calculated)

10.885

GRAVY (calculated)

-0.500

Length

229 amino acids

Sequence
(BLAST)

001: MAAKKTARNP ELIRGVGKFS RSKMYHKKGL WAIKKKNGGA LPVHSKKPAA APAAEKSPKF YPADDVKKPL VNKHKPKPTK LRSSITPGTV LIILAGRFKG
101: KRVVFLKQLV SGLLLVTGPF KFNGVPLRRV NQAYVIGTST KVDISGVSVD KIDDKYFAKQ AEKKQKKGEG EFFEEKKEEK NVLPQEKKDD QKAVDAALIK
201: AIEAVPELKG YLSARFSLKS GMKPHELVF

Best Arabidopsis Sequence Match ( AT1G74050.1 )
(BLAST)

001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF

Arabidopsis Description

RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.