Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
plastid: 23198870 mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07070 | Sorghum | mitochondrion | 96.35 | 96.35 |
| Zm00001d050920_P002 | Maize | plastid | 94.98 | 94.98 |
| Zm00001d050921_P002 | Maize | plastid | 94.06 | 94.06 |
| Os02t0591700-01 | Rice | nucleus | 88.58 | 88.58 |
| TraesCS6D01G190100.1 | Wheat | nucleus | 85.39 | 85.39 |
| TraesCS6B01G225600.1 | Wheat | mitochondrion | 85.39 | 85.39 |
| TraesCS6A01G204900.1 | Wheat | mitochondrion | 85.39 | 85.39 |
| Zm00001d049263_P001 | Maize | cytosol | 25.57 | 81.16 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 71.23 | 75.36 |
| HORVU6Hr1G041750.1 | Barley | mitochondrion | 80.82 | 74.37 |
| TraesCS6D01G180100.1 | Wheat | mitochondrion | 84.02 | 74.19 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 69.86 | 73.91 |
| TraesCS6B01G230300.2 | Wheat | mitochondrion | 83.56 | 73.79 |
| HORVU6Hr1G052600.3 | Barley | plastid | 84.47 | 70.88 |
| CDY11078 | Canola | cytosol | 66.21 | 70.39 |
| PGSC0003DMT400034524 | Potato | cytosol | 69.86 | 66.81 |
| Bra015940.1-P | Field mustard | cytosol | 70.78 | 66.52 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 70.78 | 66.24 |
| AT1G74050.1 | Thale cress | cytosol | 70.32 | 66.09 |
| CDX96510 | Canola | cytosol | 70.32 | 66.09 |
| KRH43467 | Soybean | nucleus | 69.86 | 65.95 |
| Solyc11g012110.1.1 | Tomato | nucleus | 68.95 | 65.94 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 69.86 | 65.67 |
| AT1G74060.1 | Thale cress | cytosol | 69.86 | 65.67 |
| KRH13901 | Soybean | nucleus | 69.41 | 65.52 |
| PGSC0003DMT400021753 | Potato | cytosol | 68.49 | 65.5 |
| CDY66361 | Canola | cytosol | 69.41 | 65.24 |
| CDY45859 | Canola | cytosol | 68.95 | 65.09 |
| Solyc05g054070.2.1 | Tomato | nucleus | 68.04 | 65.07 |
| Bra008128.1-P | Field mustard | cytosol | 68.95 | 64.81 |
| KRH43314 | Soybean | nucleus | 68.49 | 64.66 |
| Solyc04g014720.2.1 | Tomato | nucleus | 67.58 | 64.63 |
| CDY21701 | Canola | cytosol | 68.95 | 64.53 |
| PGSC0003DMT400060697 | Potato | cytosol | 67.12 | 64.19 |
| Bra031034.1-P | Field mustard | cytosol | 68.49 | 64.1 |
| CDY26150 | Canola | cytosol | 68.49 | 64.1 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 67.58 | 64.07 |
| AT1G18540.1 | Thale cress | cytosol | 68.04 | 63.95 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 67.58 | 63.79 |
| CDX81879 | Canola | extracellular | 68.04 | 63.68 |
| CDY19222 | Canola | cytosol | 68.04 | 63.68 |
| Bra025895.1-P | Field mustard | cytosol | 67.58 | 63.25 |
| CDX96716 | Canola | cytosol | 67.58 | 63.25 |
| CDX73042 | Canola | cytosol | 67.12 | 63.09 |
| Bra016555.1-P | Field mustard | cytosol | 67.12 | 62.82 |
| CDX83840 | Canola | cytosol | 67.12 | 62.82 |
| KRH59450 | Soybean | endoplasmic reticulum | 67.58 | 61.16 |
| Zm00001d025591_P001 | Maize | cytosol | 56.16 | 54.42 |
| Zm00001d041756_P001 | Maize | plastid | 57.99 | 30.09 |
Protein Annotations
| EntrezGene:103627361 | MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | ProteinID:AQK72191.1 | EMBL:BT067603 |
| UniProt:C0PH34 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR014722 |
| PFAM:PF01159 | ScanProsite:PS01170 | PANTHER:PTHR10715 | PANTHER:PTHR10715:SF3 | InterPro:Rib_L2_dom2 | SUPFAM:SSF50104 |
| InterPro:Translation_prot_SH3-like_sf | UniParc:UPI000195CE64 | EnsemblPlantsGene:Zm00001d017047 | EnsemblPlants:Zm00001d017047_P001 | EnsemblPlants:Zm00001d017047_T001 | SEG:seg |
Description
60S ribosomal protein L6
Coordinates
chr5:-:183747380..183749370
Molecular Weight (calculated)
24239.6 Da
IEP (calculated)
10.803
GRAVY (calculated)
-0.419
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTSKLSMG IKRASRSHAY HRRGLWAIKA KNGGVFPKAE KPAAAAEPKF YPADDVKPRV PSTRKPNPTK LRSSITPGTV LILLAGRFMG KRVVFLKQLN
101: SGLLLVSGPF KINGVPIRRV NQTYVIATST KVDISGVDVA KFDDKYFARE KKQKVKKTEG ELFETEKEAS KSLPDFKKDD QKAVDAALIK AIEAIPELKA
201: YLGARFSLRD GDKPHEMVF
101: SGLLLVSGPF KINGVPIRRV NQTYVIATST KVDISGVDVA KFDDKYFARE KKQKVKKTEG ELFETEKEAS KSLPDFKKDD QKAVDAALIK AIEAIPELKA
201: YLGARFSLRD GDKPHEMVF
001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.