Factsheet for Os02t0591700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plastid: 21433289
nucleus: 23777608
extracellular: 24083427
golgi: 25047511
nucleus: 26035336
extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0218200-00
Os05t0210600-01
Os05t0587300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74050.1	Os01t0218200-00	AT2G42580.1	19000166
AT1G74050.1	Os05t0210600-01	AT2G42580.1	19000166
AT1G74050.1	Os05t0587300-01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G225600.1	Wheat	mitochondrion	90.41	90.41
TraesCS6D01G190100.1	Wheat	nucleus	89.95	89.95
TraesCS6A01G204900.1	Wheat	mitochondrion	89.95	89.95
Os04t0473400-01	Rice	nucleus, plastid	90.41	89.19
Zm00001d017047_P001	Maize	plastid	88.58	88.58
EES07070	Sorghum	mitochondrion	88.58	88.58
Zm00001d050921_P002	Maize	plastid	88.13	88.13
Zm00001d050920_P002	Maize	plastid	88.13	88.13
HORVU6Hr1G041750.1	Barley	mitochondrion	85.84	78.99
TraesCS6D01G180100.1	Wheat	mitochondrion	88.13	77.82
TraesCS6B01G230300.2	Wheat	mitochondrion	87.67	77.42
HORVU6Hr1G052600.3	Barley	plastid	90.41	75.86
GSMUA_Achr9P22280_001	Banana	cytosol	69.41	73.43
GSMUA_Achr3P28460_001	Banana	cytosol	69.41	73.43
GSMUA_Achr4P06390_001	Banana	mitochondrion	71.69	67.09
CDY11078	Canola	cytosol	62.1	66.02
PGSC0003DMT400034524	Potato	cytosol	68.04	65.07
AT1G74050.1	Thale cress	cytosol	68.95	64.81
VIT_13s0064g01390.t01	Wine grape	cytosol	68.95	64.81
KRH13901	Soybean	nucleus	68.49	64.66
AT1G74060.1	Thale cress	cytosol	68.49	64.38
Solyc11g012110.1.1	Tomato	nucleus	67.12	64.19
KRH43467	Soybean	nucleus	67.58	63.79
KRH43314	Soybean	nucleus	67.12	63.36
Solyc04g014720.2.1	Tomato	nucleus	66.21	63.32
Bra015940.1-P	Field mustard	cytosol	67.12	63.09
KRH59448	Soybean	endoplasmic reticulum, nucleus	66.67	62.93
PGSC0003DMT400060697	Potato	cytosol	65.75	62.88
CDY66361	Canola	cytosol	66.67	62.66
CDX96510	Canola	cytosol	66.67	62.66
CDY45859	Canola	cytosol	66.21	62.5
KRH43315	Soybean	endoplasmic reticulum, nucleus	65.75	62.34
Bra008128.1-P	Field mustard	cytosol	66.21	62.23
PGSC0003DMT400021753	Potato	cytosol	64.84	62.01
CDY21701	Canola	cytosol	66.21	61.97
Solyc05g054070.2.1	Tomato	nucleus	64.38	61.57
Bra031034.1-P	Field mustard	cytosol	65.75	61.54
AT1G18540.1	Thale cress	cytosol	65.3	61.37
CDX81879	Canola	extracellular	65.3	61.11
CDY26150	Canola	cytosol	65.3	61.11
CDX96716	Canola	cytosol	64.84	60.68
CDY19222	Canola	cytosol	64.84	60.68
Bra025895.1-P	Field mustard	cytosol	64.38	60.26
CDX73042	Canola	cytosol	63.93	60.09
Bra016555.1-P	Field mustard	cytosol	63.93	59.83
CDX83840	Canola	cytosol	63.93	59.83
KRH59450	Soybean	endoplasmic reticulum	65.75	59.5
Zm00001d025591_P001	Maize	cytosol	51.14	49.56
Zm00001d041756_P001	Maize	plastid	51.6	26.78

Protein Annotations

MapMan:17.1.2.1.4	Gene3D:2.30.30.30	EntrezGene:4329831	InterPro:60S_ribosomal_L6E	EMBL:AK072777	ProteinID:BAD17436.1
ProteinID:BAD34078.1	ProteinID:BAF09202.1	ProteinID:BAS79509.1	ncoils:Coil	ProteinID:EEE57280.1	GO:GO:0000027
GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	InterPro:IPR014722	EnsemblPlantsGene:Os02g0591700	EnsemblPlants:Os02t0591700-01
PFAM:PF01159	ScanProsite:PS01170	PANTHER:PTHR10715	PANTHER:PTHR10715:SF3	UniProt:Q6YY64	InterPro:Rib_L2_dom2
SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00001A541D	RefSeq:XP_015627578.1	SEG:seg	:

Description

Similar to Candida glabrata strain CBS138 chromosome L complete sequence. (Os02t0591700-01)

Coordinates

chr2:-:22882165..22884156

Molecular Weight (calculated)

24259.5 Da

IEP (calculated)

10.811

GRAVY (calculated)

-0.539

Length

219 amino acids

Sequence
(BLAST)

001: MAPTSKLSQG IKRASRSHTY HRRGLWAIKA KNGGTFPKAG KPAAAAEPKF YPADDVKPRA PSTRKANPTK LRSTITPGTV LILLAGRYMG KRVVFLKQLK
101: SGLLLITGPF KINGVPIRRV NQAYVIATST KVDISGVKVD KFDDKYFARD KKAKAKKTEG ELFETEKEAT KNLPDFKKDD QKAVDAELIK AIEVVPDLKS
201: YLGARFSLRD GDKPHEMTF

Best Arabidopsis Sequence Match ( AT1G74050.1 )
(BLAST)

001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF

Arabidopsis Description

RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.