Factsheet for Zm00001d050921_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74050.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT1G74050.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT1G74050.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT1G74050.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT1G74050.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT1G74050.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT1G74050.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT1G74050.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050920_P002	Maize	plastid	99.09	99.09
EES07070	Sorghum	mitochondrion	94.98	94.98
Zm00001d017047_P001	Maize	plastid	94.06	94.06
Os02t0591700-01	Rice	nucleus	88.13	88.13
TraesCS6D01G190100.1	Wheat	nucleus	85.84	85.84
TraesCS6B01G225600.1	Wheat	mitochondrion	85.84	85.84
TraesCS6A01G204900.1	Wheat	mitochondrion	85.84	85.84
Zm00001d049263_P001	Maize	cytosol	25.57	81.16
GSMUA_Achr3P28460_001	Banana	cytosol	71.23	75.36
HORVU6Hr1G041750.1	Barley	mitochondrion	81.28	74.79
GSMUA_Achr9P22280_001	Banana	cytosol	69.86	73.91
TraesCS6D01G180100.1	Wheat	mitochondrion	83.56	73.79
TraesCS6B01G230300.2	Wheat	mitochondrion	83.56	73.79
HORVU6Hr1G052600.3	Barley	plastid	84.47	70.88
CDY11078	Canola	cytosol	66.21	70.39
GSMUA_Achr4P06390_001	Banana	mitochondrion	72.15	67.52
Bra015940.1-P	Field mustard	cytosol	70.78	66.52
PGSC0003DMT400034524	Potato	cytosol	69.41	66.38
AT1G74050.1	Thale cress	cytosol	70.32	66.09
CDX96510	Canola	cytosol	70.32	66.09
VIT_13s0064g01390.t01	Wine grape	cytosol	70.32	66.09
KRH43467	Soybean	nucleus	69.86	65.95
AT1G74060.1	Thale cress	cytosol	69.86	65.67
KRH13901	Soybean	nucleus	69.41	65.52
Solyc11g012110.1.1	Tomato	nucleus	68.49	65.5
CDY66361	Canola	cytosol	68.95	64.81
Bra008128.1-P	Field mustard	cytosol	68.95	64.81
CDY45859	Canola	cytosol	68.49	64.66
CDX81879	Canola	extracellular	68.95	64.53
CDY21701	Canola	cytosol	68.95	64.53
KRH43315	Soybean	endoplasmic reticulum, nucleus	68.04	64.5
KRH43314	Soybean	nucleus	68.04	64.22
Bra031034.1-P	Field mustard	cytosol	68.49	64.1
CDY26150	Canola	cytosol	68.49	64.1
Solyc04g014720.2.1	Tomato	nucleus	66.67	63.76
CDX96716	Canola	cytosol	68.04	63.68
AT1G18540.1	Thale cress	cytosol	67.58	63.52
KRH59448	Soybean	endoplasmic reticulum, nucleus	67.12	63.36
PGSC0003DMT400060697	Potato	cytosol	66.21	63.32
Solyc05g054070.2.1	Tomato	nucleus	66.21	63.32
PGSC0003DMT400021753	Potato	cytosol	66.21	63.32
Bra025895.1-P	Field mustard	cytosol	67.58	63.25
CDY19222	Canola	cytosol	67.58	63.25
CDX73042	Canola	cytosol	67.12	63.09
Bra016555.1-P	Field mustard	cytosol	67.12	62.82
CDX83840	Canola	cytosol	66.67	62.39
KRH59450	Soybean	endoplasmic reticulum	68.49	61.98
Zm00001d025591_P001	Maize	cytosol	55.25	53.54
Zm00001d041756_P001	Maize	plastid	55.71	28.91

Protein Annotations

EntrezGene:103653691	MapMan:17.1.2.1.4	Gene3D:2.30.30.30	InterPro:60S_ribosomal_L6E	ProteinID:AQK53243.1	UniProt:B6SHW0
ncoils:Coil	EMBL:EU952325	EMBL:EU952456	EMBL:EU952648	EMBL:EU953265	EMBL:EU958747
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR014722	PFAM:PF01159	ScanProsite:PS01170
PANTHER:PTHR10715	PANTHER:PTHR10715:SF3	InterPro:Rib_L2_dom2	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000182ACE5
EnsemblPlantsGene:Zm00001d050921	EnsemblPlants:Zm00001d050921_P002	EnsemblPlants:Zm00001d050921_T002	SEG:seg	:	:

Description

60S ribosomal protein L6

Coordinates

chr4:-:131330257..131332547

Molecular Weight (calculated)

24289.7 Da

IEP (calculated)

10.853

GRAVY (calculated)

-0.429

Length

219 amino acids

Sequence
(BLAST)

001: MAPTSKLSTG IKRASRSHTY HRRGLWAIKA KNGGAFPKAD KAAAAVEPKF YPADDVKPRV PSTRKPKPTK LRSSITPGTV LILLAGRFMG KRVVFLKQLK
101: SGLLLISGPF KINGVPIRRV NQTYVIATST KVDISGVDVA KFDDKYFARE KKQKVKKTEG ELFETEKEAS KSLPDFKKDD QKAVDSALIK AIEAVLELKT
201: YLGARFSLRD GDKPHEMVF

Best Arabidopsis Sequence Match ( AT1G74050.1 )
(BLAST)

001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF

Arabidopsis Description

RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.