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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • cytosol 3
  • mitochondrion 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 nucleus: 21132161
nucleus: 27291164
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G74050.1 KRH22291 AT2G42580.1 19000166
AT1G74050.1 KRH27037 AT2G42580.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH13901 Soybean nucleus 97.41 97.41
KRH59448 Soybean endoplasmic reticulum, nucleus 90.52 90.52
KRH43314 Soybean nucleus 90.09 90.09
KRH43315 Soybean endoplasmic reticulum, nucleus 88.79 89.18
KRH59450 Soybean endoplasmic reticulum 90.52 86.78
VIT_13s0064g01390.t01 Wine grape cytosol 82.33 81.97
Solyc05g054070.2.1 Tomato nucleus 78.88 79.91
PGSC0003DMT400034524 Potato cytosol 78.88 79.91
GSMUA_Achr3P28460_001 Banana cytosol 71.12 79.71
Solyc11g012110.1.1 Tomato nucleus 78.45 79.48
Bra015940.1-P Field mustard cytosol 79.74 79.4
CDY11078 Canola cytosol 70.26 79.13
PGSC0003DMT400021753 Potato cytosol 78.02 79.04
CDX96510 Canola cytosol 79.31 78.97
AT1G74060.1 Thale cress cytosol 79.31 78.97
CDX81879 Canola extracellular 79.31 78.63
Bra031034.1-P Field mustard cytosol 79.31 78.63
CDY26150 Canola cytosol 79.31 78.63
AT1G18540.1 Thale cress cytosol 78.88 78.54
AT1G74050.1 Thale cress cytosol 78.88 78.54
CDY66361 Canola cytosol 78.88 78.54
Bra008128.1-P Field mustard cytosol 78.88 78.54
GSMUA_Achr9P22280_001 Banana cytosol 69.83 78.26
CDX96716 Canola cytosol 78.45 77.78
Bra025895.1-P Field mustard cytosol 78.45 77.78
CDY19222 Canola cytosol 78.45 77.78
CDY21701 Canola cytosol 78.45 77.78
GSMUA_Achr4P06390_001 Banana mitochondrion 78.45 77.78
Solyc04g014720.2.1 Tomato nucleus 76.72 77.73
CDX83840 Canola cytosol 78.02 77.35
PGSC0003DMT400060697 Potato cytosol 76.29 77.29
CDY45859 Canola cytosol 77.16 77.16
Bra016555.1-P Field mustard cytosol 77.59 76.92
CDX73042 Canola cytosol 76.29 75.97
Zm00001d049263_P001 Maize cytosol 21.98 73.91
EES12351 Sorghum mitochondrion 67.24 71.23
Zm00001d050920_P002 Maize plastid 66.38 70.32
Zm00001d050921_P002 Maize plastid 65.95 69.86
Zm00001d017047_P001 Maize plastid 65.95 69.86
EES07070 Sorghum mitochondrion 65.95 69.86
Os04t0473400-01 Rice nucleus, plastid 65.52 68.47
Os02t0591700-01 Rice nucleus 63.79 67.58
TraesCS6A01G204900.1 Wheat mitochondrion 62.07 65.75
TraesCS6B01G225600.1 Wheat mitochondrion 62.07 65.75
TraesCS6D01G190100.1 Wheat nucleus 62.07 65.75
HORVU6Hr1G041750.1 Barley mitochondrion 61.21 59.66
TraesCS6D01G180100.1 Wheat mitochondrion 62.5 58.47
TraesCS6B01G230300.2 Wheat mitochondrion 61.64 57.66
HORVU6Hr1G052600.3 Barley plastid 60.78 54.02
Zm00001d025591_P001 Maize cytosol 43.53 44.69
Zm00001d041756_P001 Maize plastid 43.97 24.17
Protein Annotations
EntrezGene:100811720MapMan:17.1.2.1.4Gene3D:2.30.30.30InterPro:60S_ribosomal_L6EEMBL:ACUP02004865EnsemblPlantsGene:GLYMA_08G151900
GO:GO:0000027GO:GO:0002181GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003735
GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005829GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0016043GO:GO:0019538GO:GO:0022625UniProt:I1KTK0InterPro:IPR014722
EnsemblPlants:KRH43467ProteinID:KRH43467ProteinID:KRH43467.1PFAM:PF01159PFAM:PF03868PANTHER:PTHR10715
InterPro:Rib_L2_dom2InterPro:Ribosomal_L6_NSUPFAM:SSF50104InterPro:Translation_prot_SH3-like_sfUniParc:UPI00023380F6SEG:seg
Description
hypothetical protein
Coordinates
chr8:+:11665945..11668449
Molecular Weight (calculated)
25890.8 Da
IEP (calculated)
10.791
GRAVY (calculated)
-0.620
Length
232 amino acids
Sequence
(BLAST)
001: MAPKKPRTTS RNPDLVRGIG KYSRSQMYHK RGIWAIKAKN GGVLPLHDPK PKPEAPAQKP PKFYPADDVK KPLVNKHKPK PAKLRASITP GTVLILLAGR
101: FKGKRVVFLK QLPSGLLLVT GPFKINGVPL RRVNQSYVIG TSTKVDISDV NVDKFDDKYF AKEAKKKKTK GEGEFFEAEK EEKNVLPQEK KDDQKTVDTA
201: LLKAIESVPE LKSYLGARFS LKAGVKPHEL VF
Best Arabidopsis Sequence Match ( AT1G74060.1 )
(BLAST)
001: MPAKQRTAKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPAKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQG KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6B60S ribosomal protein L6-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.