Factsheet for Bra016555.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96716	Canola	cytosol	97.86	97.86
Bra025895.1-P	Field mustard	cytosol	94.44	94.44
Bra031034.1-P	Field mustard	cytosol	93.59	93.59
AT1G18540.1	Thale cress	cytosol	90.17	90.56
Bra008128.1-P	Field mustard	cytosol	88.46	88.84
Bra015940.1-P	Field mustard	cytosol	87.61	87.98
VIT_13s0064g01390.t01	Wine grape	cytosol	81.2	81.55
KRH43467	Soybean	nucleus	76.92	77.59
KRH43315	Soybean	endoplasmic reticulum, nucleus	76.5	77.49
PGSC0003DMT400034524	Potato	cytosol	75.64	77.29
KRH13901	Soybean	nucleus	76.5	77.16
Solyc11g012110.1.1	Tomato	nucleus	75.21	76.86
KRH43314	Soybean	nucleus	76.07	76.72
KRH59448	Soybean	endoplasmic reticulum, nucleus	76.07	76.72
Solyc04g014720.2.1	Tomato	nucleus	74.79	76.42
PGSC0003DMT400060697	Potato	cytosol	74.36	75.98
Solyc05g054070.2.1	Tomato	nucleus	73.93	75.55
PGSC0003DMT400021753	Potato	cytosol	73.5	75.11
GSMUA_Achr9P22280_001	Banana	cytosol	66.24	74.88
GSMUA_Achr3P28460_001	Banana	cytosol	66.24	74.88
KRH59450	Soybean	endoplasmic reticulum	76.92	74.38
GSMUA_Achr4P06390_001	Banana	mitochondrion	70.09	70.09
Zm00001d049263_P001	Maize	cytosol	20.51	69.57
Os04t0473400-01	Rice	nucleus, plastid	64.53	68.02
Zm00001d050920_P002	Maize	plastid	63.25	67.58
Zm00001d017047_P001	Maize	plastid	62.82	67.12
Zm00001d050921_P002	Maize	plastid	62.82	67.12
EES12351	Sorghum	mitochondrion	62.39	66.67
EES07070	Sorghum	mitochondrion	62.39	66.67
TraesCS6A01G204900.1	Wheat	mitochondrion	59.83	63.93
TraesCS6D01G190100.1	Wheat	nucleus	59.83	63.93
Os02t0591700-01	Rice	nucleus	59.83	63.93
TraesCS6B01G225600.1	Wheat	mitochondrion	59.4	63.47
HORVU6Hr1G041750.1	Barley	mitochondrion	56.84	55.88
TraesCS6D01G180100.1	Wheat	mitochondrion	58.55	55.24
HORVU6Hr1G052600.3	Barley	plastid	61.11	54.79
TraesCS6B01G230300.2	Wheat	mitochondrion	57.69	54.44
Zm00001d025591_P001	Maize	cytosol	41.45	42.92
Zm00001d041756_P001	Maize	plastid	41.88	23.22

Protein Annotations

MapMan:17.1.2.1.4	Gene3D:2.30.30.30	InterPro:60S_ribosomal_L6E	EnsemblPlantsGene:Bra016555	EnsemblPlants:Bra016555.1	EnsemblPlants:Bra016555.1-P
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722	UniProt:M4DJ77	PFAM:PF01159	PFAM:PF03868
PANTHER:PTHR10715	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L6_N	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00025470F4
SEG:seg	:	:	:	:	:

Description

AT1G18540 (E=2e-103) | 60S ribosomal protein L6 (RPL6A)

Coordinates

chrA08:+:19029803..19031061

Molecular Weight (calculated)

26067.0 Da

IEP (calculated)

10.918

GRAVY (calculated)

-0.510

Length

234 amino acids

Sequence
(BLAST)

001: MPAAKQRTPK VSRNPDLIRG VGKYSRSQMY HKRGLWAIKA KNGGVFPRHD AKSKVVAPAE KAAKFYPAED VKKPLANRRK PKPTKLKASI TPGTVLIILA
101: GRFKGKRVVF LKQLTSGLLL VTGPFKINGV PLRRVNQSYV IGTSTKVDIS GVSIEKFDDK YFGKVAEKKT KKGEGEFFEA DKEAKKEFPQ ERKEDQKTVD
201: AALVKSIEAV PELKIYLGAR FSLSQGMKPH ELVF

Best Arabidopsis Sequence Match ( AT1G18540.1 )
(BLAST)

001: MPAAKRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA QPKVDAPVEK PAKFYPAEDV KKPLVNRRKP KPTKLKASIT PGTVLIILAG
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF

Arabidopsis Description

RPL6A60S ribosomal protein L6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.