Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0028g02240.t01 | |
| VIT_18s0001g09830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G74050.1 | VIT_12s0028g02240.t01 | AT2G42580.1 | 19000166 |
| AT1G74050.1 | VIT_18s0001g09830.t01 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g06150.t01 | Wine grape | cytosol | 84.98 | 85.71 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 83.26 | 83.98 |
| KRH43314 | Soybean | nucleus | 83.26 | 83.62 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 83.26 | 83.62 |
| KRH13901 | Soybean | nucleus | 82.83 | 83.19 |
| AT1G74050.1 | Thale cress | cytosol | 82.83 | 82.83 |
| Bra008128.1-P | Field mustard | cytosol | 82.4 | 82.4 |
| CDY66361 | Canola | cytosol | 82.4 | 82.4 |
| KRH43467 | Soybean | nucleus | 81.97 | 82.33 |
| CDX96716 | Canola | cytosol | 82.4 | 82.05 |
| CDY26150 | Canola | cytosol | 82.4 | 82.05 |
| AT1G74060.1 | Thale cress | cytosol | 81.97 | 81.97 |
| Bra015940.1-P | Field mustard | cytosol | 81.97 | 81.97 |
| Bra025895.1-P | Field mustard | cytosol | 81.97 | 81.62 |
| CDX81879 | Canola | extracellular | 81.97 | 81.62 |
| CDX83840 | Canola | cytosol | 81.97 | 81.62 |
| CDX96510 | Canola | cytosol | 81.55 | 81.55 |
| AT1G18540.1 | Thale cress | cytosol | 81.55 | 81.55 |
| Bra031034.1-P | Field mustard | cytosol | 81.55 | 81.2 |
| Bra016555.1-P | Field mustard | cytosol | 81.55 | 81.2 |
| CDY21701 | Canola | cytosol | 81.55 | 81.2 |
| CDY19222 | Canola | cytosol | 81.55 | 81.2 |
| CDY45859 | Canola | cytosol | 80.69 | 81.03 |
| KRH59450 | Soybean | endoplasmic reticulum | 84.12 | 80.99 |
| CDY11078 | Canola | cytosol | 71.24 | 80.58 |
| Zm00001d049263_P001 | Maize | cytosol | 23.61 | 79.71 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 70.82 | 79.71 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 70.82 | 79.71 |
| CDX73042 | Canola | cytosol | 78.54 | 78.54 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 76.82 | 76.5 |
| EES12351 | Sorghum | mitochondrion | 68.24 | 72.6 |
| Zm00001d050920_P002 | Maize | plastid | 66.52 | 70.78 |
| Zm00001d050921_P002 | Maize | plastid | 66.09 | 70.32 |
| EES07070 | Sorghum | mitochondrion | 66.09 | 70.32 |
| Os04t0473400-01 | Rice | nucleus, plastid | 66.95 | 70.27 |
| Zm00001d017047_P001 | Maize | plastid | 65.67 | 69.86 |
| Os02t0591700-01 | Rice | nucleus | 64.81 | 68.95 |
| TraesCS6A01G204900.1 | Wheat | mitochondrion | 63.52 | 67.58 |
| TraesCS6B01G225600.1 | Wheat | mitochondrion | 63.52 | 67.58 |
| TraesCS6D01G190100.1 | Wheat | nucleus | 63.52 | 67.58 |
| HORVU6Hr1G041750.1 | Barley | mitochondrion | 60.52 | 59.24 |
| TraesCS6D01G180100.1 | Wheat | mitochondrion | 62.66 | 58.87 |
| TraesCS6B01G230300.2 | Wheat | mitochondrion | 61.8 | 58.06 |
| HORVU6Hr1G052600.3 | Barley | plastid | 62.23 | 55.56 |
| Zm00001d025591_P001 | Maize | cytosol | 42.49 | 43.81 |
| Zm00001d041756_P001 | Maize | plastid | 42.92 | 23.7 |
Protein Annotations
| EntrezGene:100252724 | wikigene:100252724 | MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | ProteinID:CCB49481 |
| ProteinID:CCB49481.1 | UniProt:F6HB97 | EMBL:FN595509 | GO:GO:0000027 | GO:GO:0002181 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 |
| GO:GO:0022625 | InterPro:IPR014722 | EntrezGene:LOC100252724 | wikigene:LOC100252724 | PFAM:PF01159 | PFAM:PF03868 |
| PANTHER:PTHR10715 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L6_N | SUPFAM:SSF50104 | TIGR:TC53237 | InterPro:Translation_prot_SH3-like_sf |
| UniParc:UPI00015CE59C | ArrayExpress:VIT_13s0064g01390 | EnsemblPlantsGene:VIT_13s0064g01390 | EnsemblPlants:VIT_13s0064g01390.t01 | unigene:Vvi.722 | RefSeq:XP_002265394 |
| RefSeq:XP_002265394.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr13:-:23265594..23267963
Molecular Weight (calculated)
26050.1 Da
IEP (calculated)
10.994
GRAVY (calculated)
-0.601
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKQRTPKV SRNPNLIRGI GKHSRSKMYH KRGLWAIKAK NGGVFPRHDA KPKAPAPAEK SPKFYPADDV KKPLVNRHKS KLTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLPSGLLLV TGPFKINGVP LRRVNQAYII ATSTKVDISG VNVEKFDDKY FAKETQKKKK KGEGEFFEAD KEEKSVLPQE KKDDQKAVDT
201: PLIKSIEGVP DLKTYLGARF SLKAGMKPHE LVF
101: RFKGKRVVFL KQLPSGLLLV TGPFKINGVP LRRVNQAYII ATSTKVDISG VNVEKFDDKY FAKETQKKKK KGEGEFFEAD KEEKSVLPQE KKDDQKAVDT
201: PLIKSIEGVP DLKTYLGARF SLKAGMKPHE LVF
001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.