Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26150 | Canola | cytosol | 97.01 | 97.01 |
| CDY19222 | Canola | cytosol | 96.58 | 96.58 |
| CDX96716 | Canola | cytosol | 95.73 | 95.73 |
| CDX81879 | Canola | extracellular | 94.02 | 94.02 |
| CDY21701 | Canola | cytosol | 94.02 | 94.02 |
| AT1G18540.1 | Thale cress | cytosol | 91.88 | 92.27 |
| CDX96510 | Canola | cytosol | 89.74 | 90.13 |
| CDY66361 | Canola | cytosol | 88.46 | 88.84 |
| CDY11078 | Canola | cytosol | 77.78 | 88.35 |
| CDY45859 | Canola | cytosol | 86.32 | 87.07 |
| CDX73042 | Canola | cytosol | 86.32 | 86.7 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 81.62 | 81.97 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 77.35 | 78.36 |
| KRH43467 | Soybean | nucleus | 77.35 | 78.02 |
| PGSC0003DMT400034524 | Potato | cytosol | 76.07 | 77.73 |
| KRH43314 | Soybean | nucleus | 76.92 | 77.59 |
| KRH13901 | Soybean | nucleus | 76.92 | 77.59 |
| Solyc11g012110.1.1 | Tomato | nucleus | 75.64 | 77.29 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 76.5 | 77.16 |
| Solyc04g014720.2.1 | Tomato | nucleus | 75.21 | 76.86 |
| PGSC0003DMT400060697 | Potato | cytosol | 74.79 | 76.42 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 67.09 | 75.85 |
| Solyc05g054070.2.1 | Tomato | nucleus | 73.93 | 75.55 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 66.67 | 75.36 |
| KRH59450 | Soybean | endoplasmic reticulum | 77.78 | 75.21 |
| PGSC0003DMT400021753 | Potato | cytosol | 73.5 | 75.11 |
| Zm00001d049263_P001 | Maize | cytosol | 21.37 | 72.46 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 70.51 | 70.51 |
| Os04t0473400-01 | Rice | nucleus, plastid | 64.1 | 67.57 |
| Zm00001d050920_P002 | Maize | plastid | 62.82 | 67.12 |
| EES12351 | Sorghum | mitochondrion | 62.82 | 67.12 |
| Zm00001d017047_P001 | Maize | plastid | 62.82 | 67.12 |
| EES07070 | Sorghum | mitochondrion | 62.82 | 67.12 |
| Zm00001d050921_P002 | Maize | plastid | 62.39 | 66.67 |
| TraesCS6D01G190100.1 | Wheat | nucleus | 60.26 | 64.38 |
| TraesCS6A01G204900.1 | Wheat | mitochondrion | 60.26 | 64.38 |
| TraesCS6B01G225600.1 | Wheat | mitochondrion | 59.83 | 63.93 |
| Os02t0591700-01 | Rice | nucleus | 59.83 | 63.93 |
| HORVU6Hr1G041750.1 | Barley | mitochondrion | 57.27 | 56.3 |
| TraesCS6D01G180100.1 | Wheat | mitochondrion | 58.55 | 55.24 |
| HORVU6Hr1G052600.3 | Barley | plastid | 61.11 | 54.79 |
| TraesCS6B01G230300.2 | Wheat | mitochondrion | 57.27 | 54.03 |
| Zm00001d025591_P001 | Maize | cytosol | 41.45 | 42.92 |
| Zm00001d041756_P001 | Maize | plastid | 41.88 | 23.22 |
Protein Annotations
| MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | GO:A0A078D3U6 | EnsemblPlants:CDX83840 | ProteinID:CDX83840 |
| ProteinID:CDX83840.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00139600001 | InterPro:IPR014722 | PFAM:PF01159 |
| PFAM:PF03868 | PANTHER:PTHR10715 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L6_N | SUPFAM:SSF50104 | InterPro:Translation_prot_SH3-like_sf |
| UniParc:UPI0001BA8556 | SEG:seg | : | : | : | : |
Description
BnaC08g18050D
Coordinates
chrLK031834:+:748477..749808
Molecular Weight (calculated)
26134.2 Da
IEP (calculated)
10.872
GRAVY (calculated)
-0.546
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAAKQRTPK VSRNPDLIRG VGKYSRSQMY HKRGLWAIKA KNGGVFPRHD AKSKVEAPVE KAAKFYPAED VKKPLANRRK PKPTKLKASI TPGTVLIILA
101: GRFKGKRVVF LKQLTSGLLL VTGPFKINGV PLRRVNQSYV IGTSTKVDIS GVSIEKFDDK YFGKVAEKKT KKGEGEFFEA DKKEKKEIPQ EKKEDQKTVD
201: AALIKSIEAV PELKIYLGAR FSLSQGMKPH ELVF
101: GRFKGKRVVF LKQLTSGLLL VTGPFKINGV PLRRVNQSYV IGTSTKVDIS GVSIEKFDDK YFGKVAEKKT KKGEGEFFEA DKKEKKEIPQ EKKEDQKTVD
201: AALIKSIEAV PELKIYLGAR FSLSQGMKPH ELVF
001: MPAAKRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA QPKVDAPVEK PAKFYPAEDV KKPLVNRRKP KPTKLKASIT PGTVLIILAG
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF
Arabidopsis Description
RPL6A60S ribosomal protein L6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ76]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.