Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G190100.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS6B01G225600.1 | Wheat | mitochondrion | 98.63 | 98.63 |
| Os02t0591700-01 | Rice | nucleus | 89.95 | 89.95 |
| EES07070 | Sorghum | mitochondrion | 88.58 | 88.58 |
| Zm00001d050921_P002 | Maize | plastid | 85.84 | 85.84 |
| Zm00001d050920_P002 | Maize | plastid | 85.84 | 85.84 |
| Zm00001d017047_P001 | Maize | plastid | 85.39 | 85.39 |
| HORVU6Hr1G052600.3 | Barley | plastid | 94.98 | 79.69 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 70.32 | 74.4 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 68.49 | 72.46 |
| CDY11078 | Canola | cytosol | 63.47 | 67.48 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 70.78 | 66.24 |
| Solyc11g012110.1.1 | Tomato | nucleus | 67.12 | 64.19 |
| PGSC0003DMT400034524 | Potato | cytosol | 66.67 | 63.76 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 67.58 | 63.52 |
| Solyc04g014720.2.1 | Tomato | nucleus | 66.21 | 63.32 |
| KRH13901 | Soybean | nucleus | 66.67 | 62.93 |
| PGSC0003DMT400060697 | Potato | cytosol | 65.75 | 62.88 |
| AT1G74050.1 | Thale cress | cytosol | 66.67 | 62.66 |
| Bra015940.1-P | Field mustard | cytosol | 66.67 | 62.66 |
| CDX96510 | Canola | cytosol | 66.21 | 62.23 |
| AT1G74060.1 | Thale cress | cytosol | 66.21 | 62.23 |
| Bra008128.1-P | Field mustard | cytosol | 66.21 | 62.23 |
| KRH43467 | Soybean | nucleus | 65.75 | 62.07 |
| KRH43314 | Soybean | nucleus | 65.75 | 62.07 |
| Solyc05g054070.2.1 | Tomato | nucleus | 64.84 | 62.01 |
| CDY21701 | Canola | cytosol | 66.21 | 61.97 |
| AT1G18540.1 | Thale cress | cytosol | 65.75 | 61.8 |
| CDY66361 | Canola | cytosol | 65.75 | 61.8 |
| CDY45859 | Canola | cytosol | 65.3 | 61.64 |
| PGSC0003DMT400021753 | Potato | cytosol | 64.38 | 61.57 |
| Bra031034.1-P | Field mustard | cytosol | 65.75 | 61.54 |
| CDX81879 | Canola | extracellular | 65.75 | 61.54 |
| CDY26150 | Canola | cytosol | 65.75 | 61.54 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 64.84 | 61.47 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 64.84 | 61.21 |
| CDY19222 | Canola | cytosol | 65.3 | 61.11 |
| CDX96716 | Canola | cytosol | 65.3 | 61.11 |
| Bra025895.1-P | Field mustard | cytosol | 64.84 | 60.68 |
| CDX83840 | Canola | cytosol | 64.38 | 60.26 |
| Bra016555.1-P | Field mustard | cytosol | 63.93 | 59.83 |
| CDX73042 | Canola | cytosol | 63.47 | 59.66 |
| KRH59450 | Soybean | endoplasmic reticulum | 64.38 | 58.26 |
| Zm00001d025591_P001 | Maize | cytosol | 49.32 | 47.79 |
| Zm00001d041756_P001 | Maize | plastid | 50.68 | 26.3 |
Protein Annotations
| MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR014722 |
| PFAM:PF01159 | PANTHER:PTHR10715 | PANTHER:PTHR10715:SF3 | InterPro:Rib_L2_dom2 | SUPFAM:SSF50104 | EnsemblPlantsGene:TraesCS6A01G204900 |
| EnsemblPlants:TraesCS6A01G204900.1 | InterPro:Translation_prot_SH3-like_sf | TIGR:cd13156 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6A:+:357404769..357406251
Molecular Weight (calculated)
24470.9 Da
IEP (calculated)
10.786
GRAVY (calculated)
-0.554
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTSKMALG IKRASRSHTY HRRGLWAIKA KHGGAFPKAE KPAAVAEPKF YPADDVKPRT ASTRKPKPTK LRSTITPGTV LILLAGRYMG KRVVFLKQLK
101: SGLLLISGPF KINGVPVRRV NQAYVIATST KVDISGVNVE KFDDKYFARD KKTRAKKTEG ELFETEKETT KNLPEFKKDD QKAIDAELIK AIEAVPDLKN
201: YLGARFSLRD GDKPHEMTF
101: SGLLLISGPF KINGVPVRRV NQAYVIATST KVDISGVNVE KFDDKYFARD KKTRAKKTEG ELFETEKETT KNLPEFKKDD QKAIDAELIK AIEAVPDLKN
201: YLGARFSLRD GDKPHEMTF
001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.