Factsheet for PGSC0003DMT400054909

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054803	Potato	cytosol	43.45	60.88
PGSC0003DMT400054796	Potato	cytosol, plastid	86.89	58.21
Solyc10g007230.1.1	Tomato	cytosol	78.16	54.03
Solyc10g007420.2.1	Tomato	cytosol	54.61	52.94
PGSC0003DMT400054911	Potato	cytosol	60.44	47.79
PGSC0003DMT400054902	Potato	cytosol	33.98	46.82
PGSC0003DMT400054904	Potato	cytosol	67.48	46.03
PGSC0003DMT400091014	Potato	nucleus	51.7	35.09
Zm00001d004494_P001	Maize	cytosol, mitochondrion	18.45	34.23
Os05t0210600-01	Rice	cytosol	31.07	31.92
PGSC0003DMT400032362	Potato	cytosol	53.16	31.29
KRH27330	Soybean	cytosol	49.03	28.94
VIT_19s0014g01470.t01	Wine grape	cytosol	48.54	28.86
KRH21985	Soybean	cytosol	48.3	28.76
KRH55099	Soybean	nucleus	47.09	28.61
KRH26223	Soybean	nucleus	46.84	28.55
Bra038116.1-P	Field mustard	cytosol	45.15	28.27
CDY25865	Canola	cytosol	45.15	28.27
CDY45930	Canola	cytosol	44.42	27.77
CDY25722	Canola	cytosol, plastid	44.17	27.29
PGSC0003DMT400022057	Potato	plastid	28.64	27.0
CDY02514	Canola	cytosol, plastid	43.69	26.87
Bra030946.1-P	Field mustard	cytosol, plastid	43.69	26.87
AT1G53300.1	Thale cress	cytosol	45.15	26.61
GSMUA_Achr10P...	Banana	cytosol	41.99	25.94
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	31.55	25.84
Os01t0218200-00	Rice	plastid	41.75	25.6
HORVU3Hr1G027650.2	Barley	mitochondrion	40.78	25.23
GSMUA_Achr4P08560_001	Banana	cytosol	41.75	25.11
TraesCS3A01G143000.1	Wheat	cytosol	40.78	25.0
TraesCS3B01G162100.1	Wheat	cytosol	40.78	25.0
Zm00001d039362_P002	Maize	cytosol	40.53	24.93
TraesCS3D01G144600.1	Wheat	cytosol	40.53	24.74
CDY40820	Canola	mitochondrion	16.75	24.56
Zm00001d008930_P003	Maize	cytosol	39.81	24.3
Os05t0587300-01	Rice	cytosol	32.52	24.14
EES02247	Sorghum	plastid	40.05	24.12
GSMUA_Achr7P24480_001	Banana	cytosol	37.62	23.88
GSMUA_Achr3P25160_001	Banana	cytosol	41.02	23.74
CDY34222	Canola	cytosol	17.72	23.7
EES01073	Sorghum	cytosol	38.84	23.49
AT3G14950.1	Thale cress	cytosol	41.5	23.42
HORVU3Hr1G054240.2	Barley	cytosol, mitochondrion	39.08	23.4
TraesCS3D01G231300.1	Wheat	cytosol, mitochondrion	39.08	23.4
TraesCS3B01G251600.1	Wheat	cytosol, mitochondrion	39.08	23.4
Zm00001d044479_P001	Maize	cytosol	38.59	23.35
TraesCS3A01G221800.1	Wheat	cytosol	38.84	23.26
TraesCS1B01G462300.1	Wheat	cytosol	39.08	23.2
TraesCS1D01G437100.1	Wheat	nucleus	39.08	23.07
TraesCS1A01G427400.1	Wheat	cytosol	38.84	22.96
HORVU1Hr1G093390.2	Barley	cytosol	37.38	22.88
OQU78515	Sorghum	cytosol	38.59	22.71
Zm00001d011352_P001	Maize	cytosol	37.38	22.61
CDY20095	Canola	nucleus	39.56	22.39
CDY32327	Canola	cytosol	39.56	22.36
CDX98517	Canola	cytosol	38.84	22.1
CDX97619	Canola	cytosol	38.35	21.79
Bra027292.1-P	Field mustard	cytosol	38.59	21.66
PGSC0003DMT400053133	Potato	cytosol, plastid	31.31	21.54
Bra021583.1-P	Field mustard	nucleus	39.08	21.3
PGSC0003DMT400045666	Potato	cytosol	28.16	21.28
Bra023793.1-P	Field mustard	cytosol	18.45	18.45
GSMUA_AchrUn_...	Banana	cytosol	11.89	18.28
CDY34223	Canola	cytosol	13.35	16.87
Bra023794.1-P	Field mustard	cytosol, nucleus, plastid	12.86	16.26
Zm00001d009724_P009	Maize	cytosol	39.08	15.06
PGSC0003DMT400029173	Potato	cytosol	9.22	12.97
CDY34224	Canola	cytosol	0.97	5.8
Bra023795.1-P	Field mustard	cytosol	1.21	5.68
Zm00001d006366_P001	Maize	cytosol	0.24	0.43
Zm00001d033961_P001	Maize	cytosol	0.24	0.43

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	UniProt:M1BX12	EnsemblPlantsGene:PGSC0003DMG400021305	PGSC:PGSC0003DMG400021305	EnsemblPlants:PGSC0003DMT400054909
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF402	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF52833	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	InterPro:Thioredoxin-like_sf	UniParc:UPI000296852D
SEG:seg	:	:	:	:	:

Description

Small glutamine-rich tetratricopeptide repeat-containing protein A [Source:PGSC_GENE;Acc:PGSC0003DMG400021305]

Coordinates

chr10:+:2264136..2267204

Molecular Weight (calculated)

45761.8 Da

IEP (calculated)

8.381

GRAVY (calculated)

-0.215

Length

412 amino acids

Sequence
(BLAST)

001: MRSKPERTVL NDNEMIPGMY GYGSIMPGGA MPKTRRVAGS ASPESSGVAS SSKDNPEELN TQANEIYKKG NFAEALSLYD KAIAISPGDG RFHCTRAAAL
101: MGLKRIIEAA KECEEAIRLS PTYVRAHQRL GSLLLWLYRK LRVKCAIFGY LCHLDWTTTL QETEAATTSG ADSSPQLFAC QAEAHLKLHQ LKDAELWIYK
201: ARTYEPSATA RQSNFFGMLS EAYVFFVQAQ IDSTLGKFDD ACIAIERAAR IDLQSAEVTG KLKNMRLVGK ARTLGNEHFH SKRYAQDCSA YGEGLLLDSS
301: NSILYYNRAN CWFKLGEFEK SLADSNHALL IRPQYTKALF RKATSNIKGN DLFFCFLLKV DVKQSPAIAT AEKITVVPTF TLYKDGSCVV DTVTATPDLL
401: EFLIKNTLFD PI

Best Arabidopsis Sequence Match ( AT1G53300.1 )
(BLAST)

001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG

Arabidopsis Description

TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.