Factsheet for PGSC0003DMT400053133

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g055000.2.1	Tomato	cytosol	93.66	95.57
CDY08814	Canola	cytosol, plastid	40.9	58.33
KRH59356	Soybean	plastid	41.74	58.28
KRG97591	Soybean	plastid	49.92	54.56
KRH43206	Soybean	cytosol, plastid	49.58	54.2
Bra006046.1-P	Field mustard	cytosol	39.73	53.36
CDX78366	Canola	cytosol	39.73	53.36
CDX81156	Canola	cytosol	39.4	52.91
KRH31282	Soybean	plastid	51.25	52.75
Bra024360.1-P	Field mustard	mitochondrion	49.92	51.02
CDY68462	Canola	cytosol	49.75	50.59
AT5G65160.1	Thale cress	cytosol	50.08	50.59
AT5G10090.1	Thale cress	cytosol	49.92	50.34
CDX69861	Canola	cytosol, mitochondrion	46.24	49.46
Bra009058.1-P	Field mustard	cytosol, mitochondrion	46.24	49.46
CDY40077	Canola	cytosol	47.25	49.22
CDY21634	Canola	cytosol, mitochondrion	45.91	49.11
CDX85779	Canola	cytosol	46.91	48.87
VIT_00s0304g00060.t01	Wine grape	plastid	57.26	48.11
Os02t0753500-01	Rice	cytosol	22.37	45.89
PGSC0003DMT400022057	Potato	plastid	33.22	45.54
GSMUA_Achr11P...	Banana	plastid	42.24	43.25
HORVU4Hr1G024490.1	Barley	cytosol	22.54	42.19
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	40.07	41.88
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	40.73	41.71
KXG30730	Sorghum	cytosol, plastid	41.07	41.69
Zm00001d018088_P001	Maize	cytosol	39.57	40.17
PGSC0003DMT400054803	Potato	cytosol	19.7	40.14
PGSC0003DMT400045666	Potato	cytosol	36.06	39.63
GSMUA_Achr3P24690_001	Banana	cytosol	44.91	39.62
TraesCS6A01G301400.1	Wheat	mitochondrion	38.06	38.38
HORVU6Hr1G074660.5	Barley	plastid	39.57	37.98
PGSC0003DMT400054909	Potato	cytosol	21.54	31.31
PGSC0003DMT400054902	Potato	cytosol	13.52	27.09
PGSC0003DMT400032362	Potato	cytosol	31.39	26.86
PGSC0003DMT400054796	Potato	cytosol, plastid	27.21	26.5
PGSC0003DMT400054911	Potato	cytosol	22.7	26.1
Bra028602.1-P	Field mustard	cytosol	46.91	25.8
PGSC0003DMT400054904	Potato	cytosol	25.38	25.17
PGSC0003DMT400091014	Potato	nucleus	23.54	23.23
PGSC0003DMT400029173	Potato	cytosol	7.01	14.33

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102589469	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1BUG1	PFAM:PF13176	PFAM:PF13432
EnsemblPlantsGene:PGSC0003DMG400020614	PGSC:PGSC0003DMG400020614	EnsemblPlants:PGSC0003DMT400053133	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904
PANTHER:PTHR22904:SF360	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI000295C69C	RefSeq:XP_015167807.1	SEG:seg	:	:	:

Description

Tetratricopeptide repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020614]

Coordinates

chr4:+:51335987..51339652

Molecular Weight (calculated)

65433.3 Da

IEP (calculated)

9.773

GRAVY (calculated)

-0.702

Length

599 amino acids

Sequence
(BLAST)

001: MGDASDERKT GCGLLNAVFG RKNMWTKRST STGSLPMPNS NNVNNLTRSS STQNSKKHRN GSNEAFLDNR DNEKQADRII PRPNQNQSKV AANKGNLQGA
101: APVYNQQKNN GQGVQQGYNN QGRKVAPPSM GLSGELENMI QDHQRSKGAN TLVRASSSNV MLFGNLGNIR QQGGGNGTGA TTTSTANHVL DYLPRTAKEE
201: PPQQPSQNGK YPTSVMGNVV KKKGDQEQGK TGGSVSLCRA LSTRMDPEQL KILGNEDYKN GRFAEALALY DAAISIDPNK ASYRSNKSAA LTALGRLLQA
301: VFECREAISI DPHYQRAHNR LATLCVRLGD TEKAMYHYKQ AASEADPDVV TKSKTIQIHL NKCTEAKRQR DWNTLLKESA LAISAGADSA SQKIFALKAE
401: ALVKLHRYHE ADQTLKNGPN FDIDECIKFF GPIGNAGLLV IQAQVDMAAG RIDDALAAAQ RASQLDGNNK EVNMIVRRTK AVASARTKGN ELFKGGKYGD
501: ASVAYGVGLE HDPHNSVLLC NRAACRSKLG QFEKSLEDCN TALNVRPSFT KARLRKADCY FKMGKWEACI QECEVLIKET PENEDVGQMI KDAQQQLKK

Best Arabidopsis Sequence Match ( AT5G65160.1 )
(BLAST)

001: MEENTAVAAA ERRSGCGLLS VMFGRRGLWS KKSTAVDNGS QKSTSTAATA TSNIQFTKSP GTELKKPRDD QKVSAEPIQN NKIQNNQNHN QRSVVPSKPS
101: SNQYPNNHQL GTYENHQRSS YNNNSNSVDP YRGGGGQRKV PREAIGLSGE LESMITDHQK AKGTNGLVRA SSSNIMLYGN LGNLNQTGPV TAGVNYGNNN
201: GYGVKRTTMG AATATTTKSQ DQSGSLCRAI STRMDPETLK IMGNEDYKNG NFAEALALYD AAIAIDPNKA AYRSNKSAAL TALGRILDAV FECREAIRIE
301: PHYHRAHHRL GNLYLRLGEV EKSIYHFKHS GPEADREDIA KAKTVQTHLN KCTEAKRLRD WNGLITETTN TISSGADAAP QVYALQAEAL LKTHRHQEAD
401: DALSRCPVFD IDASTRYYGP VGYAGFLVVR AQVHLASGRF DEAVEAIQRA GKLDGNNREV IMISRRAQAV TEARFKGNEL FKSGRFQEAC AAYGEGLDHD
501: PRNSVLLCNR AACRSKLGQF DKSIEDCTAA LSVRPGYGKA RLRRADCNAK IEKWELAVGD YEILKKESPE DEQVIRGLSE AQQQLMKRSG QDS

Arabidopsis Description

TPR14At5g65160 [Source:UniProtKB/TrEMBL;Acc:Q9FJQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.