CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024360.1-P	Field mustard	mitochondrion	100.0	71.67
CDY68462	Canola	cytosol	98.1	69.95
CDX78366	Canola	cytosol	72.14	67.94
CDX81156	Canola	cytosol	70.95	66.82
AT5G65160.1	Thale cress	cytosol	88.81	62.9
CDX69861	Canola	cytosol, mitochondrion	74.29	55.71
CDY21634	Canola	cytosol, mitochondrion	73.33	55.0
CDX85779	Canola	cytosol	74.29	54.26
CDY40077	Canola	cytosol	74.05	54.09
Os02t0753500-01	Rice	cytosol	34.76	50.0
KRH59356	Soybean	plastid	50.0	48.95
KRH43206	Soybean	cytosol, plastid	61.67	47.26
KRH31282	Soybean	plastid	65.0	46.91
KRG97591	Soybean	plastid	59.52	45.62
HORVU4Hr1G024490.1	Barley	cytosol	34.52	45.31
Solyc04g055000.2.1	Tomato	cytosol	58.1	41.57
PGSC0003DMT400053133	Potato	cytosol, plastid	58.33	40.9
VIT_00s0304g00060.t01	Wine grape	plastid	65.71	38.71
GSMUA_Achr11P...	Banana	plastid	51.9	37.27
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	51.43	36.92
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	50.24	36.82
KXG30730	Sorghum	cytosol, plastid	51.43	36.61
Zm00001d018088_P001	Maize	cytosol	51.19	36.44
TraesCS6A01G301400.1	Wheat	mitochondrion	49.29	34.85
CDX87474	Canola	cytosol	42.38	33.84
HORVU6Hr1G074660.5	Barley	plastid	49.76	33.49
CDX88420	Canola	cytosol	41.67	33.27
CDX79246	Canola	cytosol	39.52	32.42
CDX68030	Canola	cytosol	39.29	32.42
GSMUA_Achr3P24690_001	Banana	cytosol	50.95	31.52
CDY34224	Canola	cytosol	4.76	28.99
CDY25865	Canola	cytosol	41.43	26.44
CDY45930	Canola	cytosol	41.19	26.25
CDY49237	Canola	cytosol	40.95	25.79
CDY40820	Canola	mitochondrion	17.14	25.62
CDY25722	Canola	cytosol, plastid	40.48	25.49
CDY51514	Canola	cytosol	40.24	25.26
CDX71941	Canola	cytosol	40.24	25.07
CDY55390	Canola	cytosol	39.76	24.96
CDY61202	Canola	cytosol	39.76	24.89
CDY42827	Canola	cytosol	39.76	24.89
CDY02514	Canola	cytosol, plastid	39.52	24.78
CDY34222	Canola	cytosol	18.1	24.68
CDX98517	Canola	cytosol	36.19	20.99
CDX97619	Canola	cytosol	35.71	20.69
CDY34223	Canola	cytosol	15.71	20.25
CDY32327	Canola	cytosol	35.0	20.16
CDY20095	Canola	nucleus	34.76	20.05
CDX72245	Canola	cytosol	10.24	16.35
CDY39682	Canola	cytosol	10.48	15.88
CDY65185	Canola	cytosol	10.24	15.52
CDX85780	Canola	nucleus	13.81	12.24
CDX68662	Canola	endoplasmic reticulum, mitochondrion	1.43	5.88
CDY28190	Canola	extracellular	1.43	5.88
CDY00576	Canola	cytosol	0.71	2.56

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078F6Z6	EnsemblPlants:CDY08814	ProteinID:CDY08814	ProteinID:CDY08814.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00000774001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF07719	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF360
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2	InterPro:TPR_repeat
UniParc:UPI0004EE6F13	SEG:seg	:	:	:	:

Description

BnaA06g24100DBnaA06g24100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6Z6]

Coordinates

chrLK031989:+:672791..674750

Molecular Weight (calculated)

46388.6 Da

IEP (calculated)

7.965

GRAVY (calculated)

-0.548

Length

420 amino acids

Sequence
(BLAST)

001: MLYGNLGNLN QSGPATTLGY GNVNSGGGYV ATRTNVAAPA TVTTKSQDQS GSLCRAISTR MDPETLKIMG NEDYKNGNFA EALALYDAAI AIDPNKAAYR
101: SNKSAALTAL GRILDAVFEC REAIRIEPHY HRAHHRLGNL YLRLGEVEKS IYHFKHSGPE ADPEDIVKAK AVQTHLNKCT EAKRLRDWNG LITETTNTIS
201: SGADAAPQVY ALQAEALLKT HRHQEADDAL SKCPVFDVET STRYYGPVGY AGFLVVRAQV HLASGRFDEA VEAIQRAGQL DGNNREVAMV SRRAQAVTEA
301: RFRGNELFKD GRFEEACAAY GEGLDHDPRN SVLLCNRAAC RSKLGQFEKS VDDCTAAISV RPGYRKARLR RVDCNTKMRK WELVVADYEI LKKETPEDEE
401: VTRGLSEAQQ QLMKRRGQDS

Best Arabidopsis Sequence Match ( AT5G65160.1 )
(BLAST)

001: MEENTAVAAA ERRSGCGLLS VMFGRRGLWS KKSTAVDNGS QKSTSTAATA TSNIQFTKSP GTELKKPRDD QKVSAEPIQN NKIQNNQNHN QRSVVPSKPS
101: SNQYPNNHQL GTYENHQRSS YNNNSNSVDP YRGGGGQRKV PREAIGLSGE LESMITDHQK AKGTNGLVRA SSSNIMLYGN LGNLNQTGPV TAGVNYGNNN
201: GYGVKRTTMG AATATTTKSQ DQSGSLCRAI STRMDPETLK IMGNEDYKNG NFAEALALYD AAIAIDPNKA AYRSNKSAAL TALGRILDAV FECREAIRIE
301: PHYHRAHHRL GNLYLRLGEV EKSIYHFKHS GPEADREDIA KAKTVQTHLN KCTEAKRLRD WNGLITETTN TISSGADAAP QVYALQAEAL LKTHRHQEAD
401: DALSRCPVFD IDASTRYYGP VGYAGFLVVR AQVHLASGRF DEAVEAIQRA GKLDGNNREV IMISRRAQAV TEARFKGNEL FKSGRFQEAC AAYGEGLDHD
501: PRNSVLLCNR AACRSKLGQF DKSIEDCTAA LSVRPGYGKA RLRRADCNAK IEKWELAVGD YEILKKESPE DEQVIRGLSE AQQQLMKRSG QDS

Arabidopsis Description

TPR14At5g65160 [Source:UniProtKB/TrEMBL;Acc:Q9FJQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.