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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 1
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os01t0616300-01 Rice cytosol 24.79 46.77
CDY49237 Canola cytosol 50.43 8.85
CDY51514 Canola cytosol 49.57 8.67
CDY61202 Canola cytosol 49.57 8.64
CDY42827 Canola cytosol 49.57 8.64
CDX71941 Canola cytosol 49.57 8.61
CDY55390 Canola cytosol 47.01 8.22
CDY25722 Canola cytosol, plastid 35.04 6.15
CDY02514 Canola cytosol, plastid 35.04 6.12
CDY25865 Canola cytosol 34.19 6.08
CDY34224 Canola cytosol 3.42 5.8
CDY45930 Canola cytosol 32.48 5.77
CDX97619 Canola cytosol 31.62 5.1
CDY20095 Canola nucleus 31.62 5.08
CDY32327 Canola cytosol 31.62 5.08
CDX98517 Canola cytosol 30.77 4.97
CDY28190 Canola extracellular 4.27 4.9
CDX68662 Canola endoplasmic reticulum, mitochondrion 4.27 4.9
CDY39682 Canola cytosol 5.98 2.53
CDY65185 Canola cytosol 5.98 2.53
CDX72245 Canola cytosol 5.13 2.28
CDY34222 Canola cytosol 5.98 2.27
CDX85780 Canola nucleus 8.55 2.11
CDY34223 Canola cytosol 5.13 1.84
Zm00001d035258_P001 Maize cytosol 3.42 1.72
Zm00001d017669_P001 Maize cytosol 3.42 1.72
CDY40820 Canola mitochondrion 3.42 1.42
CDX79246 Canola cytosol 5.98 1.37
CDX68030 Canola cytosol 5.13 1.18
CDX88420 Canola cytosol 5.13 1.14
CDX87474 Canola cytosol 5.13 1.14
CDX81156 Canola cytosol 3.42 0.9
CDX78366 Canola cytosol 3.42 0.9
Os01t0616333-01 Rice cytosol, plastid 0.85 0.83
CDY08814 Canola cytosol, plastid 2.56 0.71
CDX85779 Canola cytosol 3.42 0.7
CDY40077 Canola cytosol 3.42 0.7
CDY68462 Canola cytosol 2.56 0.51
CDX69861 Canola cytosol, mitochondrion 1.71 0.36
CDY21634 Canola cytosol, mitochondrion 1.71 0.36
Protein Annotations
EnsemblPlants:CDY00576EnsemblPlantsGene:GSBRNA2T00110334001Gene3D:3.40.30.10GO:A0A078EHI0GO:GO:0005575GO:GO:0005623
GO:GO:0008150GO:GO:0009987GO:GO:0019725GO:GO:0045454InterPro:IPR013766InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domainPANTHER:PTHR22904PANTHER:PTHR22904:SF374PFAM:PF00085ProteinID:CDY00576ProteinID:CDY00576.1
SEG:segSUPFAM:SSF52833UniParc:UPI0004EEFAD0MapMan:35.1::
Description
BnaC04g23490D
Coordinates
chrLK031920:+:384741..385721
Molecular Weight (calculated)
13643.7 Da
IEP (calculated)
10.070
GRAVY (calculated)
-0.132
Length
117 amino acids
Sequence
(BLAST)
001: MSSLFPFPSI PKKKESLCFT SNHHQTDKVK LYISPFVNTL CLRYPLVHFY KARPHVDVDE SLALAKAESI KKVPTFKVYK EGDKVKEMVC PRLLVTSYLR
101: TQLHISSYKT SFFSFFF
Best Arabidopsis Sequence Match ( AT3G58620.1 )
(BLAST)
001: MSHYRRHSLE PSITSKFRDS LSFQRDDDVI NKPDFRELDF GSPLRPRGSS SAAATPAASG SSSSSSGSAS GKPAVTSQFA RRSHSGELSG LSQTSPVKPG
101: SVNRNLKPGH RRSASAGTPL IYSGLGFSPV NNNNNSSRGG GSGATSPNPG VLPTGNICPS GRILKTGMAT RASVRPETLC TGTANYGHGN IIRTGGKVSH
201: ATKAAAEMSD SEEVKKAGNV MYRKGNYAEA LALYDRAISL SPENPAYRSN RAAALAASGR LEEAVKECLE AVRCDPSYAR AHQRLASLYL RLGEAENARR
301: HLCVSGQCPD QADLQRLQTL EKHLRLCTEA RKIGDWRTVI SEIDAAIANG ADSSPQLVAC KAEAFLRLHQ IKDSDLCISS IPRLDHHHTQ PPEKLFGIVC
401: DAYVLCVQAQ VDMALGRFEN AIVKVERAMT IDHSNSPEVV SVLNNVKNVA KARTRGNELF SSGRYSEASV AYGDGLKLDA FNSVLYCNRA ACWFKLGMWE
501: KSVDDCNQAL RIQPSYTKAL LRRAASYGKL GRWEDAVRDY EVLRKELPGD SEVAESLQRA RNALSNKSEE PKYLGFNNEV EEVSTLDKFK TATSLPGISV
601: FHFKSSSNRQ SEAISPFVNT LCLRYPLVHF FKVDVEESLA LAKAESIKKI PTFKIYKKGE KVKEMVCPSH QLLEDSVTHF LL
Arabidopsis Description
TTL4TTL4 [Source:UniProtKB/TrEMBL;Acc:A0A178VKQ3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.