Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78366 | Canola | cytosol | 13.29 | 14.13 |
| CDY08814 | Canola | cytosol, plastid | 12.24 | 13.81 |
| CDX81156 | Canola | cytosol | 12.66 | 13.45 |
| CDY34224 | Canola | cytosol | 1.9 | 13.04 |
| CDY68462 | Canola | cytosol | 13.92 | 11.21 |
| CDX85779 | Canola | cytosol | 13.5 | 11.13 |
| CDY49237 | Canola | cytosol | 15.61 | 11.09 |
| CDY40077 | Canola | cytosol | 13.29 | 10.96 |
| CDY25865 | Canola | cytosol | 14.98 | 10.79 |
| CDY45930 | Canola | cytosol | 14.98 | 10.77 |
| CDY51514 | Canola | cytosol | 15.19 | 10.76 |
| CDY55390 | Canola | cytosol | 15.19 | 10.76 |
| CDX71941 | Canola | cytosol | 15.19 | 10.68 |
| CDX69861 | Canola | cytosol, mitochondrion | 12.24 | 10.36 |
| CDY21634 | Canola | cytosol, mitochondrion | 12.24 | 10.36 |
| CDY42827 | Canola | cytosol | 14.56 | 10.28 |
| CDX72245 | Canola | cytosol | 5.7 | 10.27 |
| CDY02514 | Canola | cytosol, plastid | 14.35 | 10.15 |
| CDY25722 | Canola | cytosol, plastid | 14.13 | 10.04 |
| Os01t0616333-01 | Rice | cytosol, plastid | 2.53 | 9.92 |
| CDX68662 | Canola | endoplasmic reticulum, mitochondrion | 2.11 | 9.8 |
| CDX88420 | Canola | cytosol | 10.76 | 9.7 |
| CDY61202 | Canola | cytosol | 13.71 | 9.69 |
| Os01t0616300-01 | Rice | cytosol | 1.27 | 9.68 |
| CDX87474 | Canola | cytosol | 10.55 | 9.51 |
| CDY65185 | Canola | cytosol | 5.49 | 9.39 |
| CDY39682 | Canola | cytosol | 5.49 | 9.39 |
| CDX79246 | Canola | cytosol | 10.13 | 9.38 |
| CDX68030 | Canola | cytosol | 9.92 | 9.23 |
| CDY20095 | Canola | nucleus | 13.71 | 8.93 |
| CDY28190 | Canola | extracellular | 1.9 | 8.82 |
| CDY32327 | Canola | cytosol | 13.5 | 8.78 |
| CDY34223 | Canola | cytosol | 5.91 | 8.59 |
| CDY00576 | Canola | cytosol | 2.11 | 8.55 |
| CDX98517 | Canola | cytosol | 12.45 | 8.15 |
| CDX97619 | Canola | cytosol | 12.24 | 8.0 |
| CDY40820 | Canola | mitochondrion | 4.64 | 7.83 |
| CDY34222 | Canola | cytosol | 4.85 | 7.47 |
| Zm00001d017669_P001 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d035258_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX85780 | EnsemblPlantsGene:GSBRNA2T00143539001 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF4 | PFAM:PF04818 |
| PFscan:PS51391 | ProteinID:CDX85780 | ProteinID:CDX85780.1 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 |
| UniParc:UPI0004EDDCAB | MapMan:35.2 | : | : | : | : |
Description
BnaA02g00330D
Coordinates
chrLK031842:+:1650019..1653222
Molecular Weight (calculated)
52634.3 Da
IEP (calculated)
8.652
GRAVY (calculated)
-0.713
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTVFSEEIL IDKLAKLNST QQSIETLSHW CIFNRVKAEL IVTTWEKQFH STEMAQKVPL LYLANDILQN SKRQGNEFVQ EFWNVLPKAV KDIVFQGDDR
101: DKGVVSRLVK IWEDRKVFGS RSKNLRDVML GEDCPLPLDI SKKRPRGSKS SKRDSKSSRT KVSSGGVAEK IASAYHLVVA ENSNEEAEMS KCKSAVKRIR
201: KMEKDVEEAC STVKDNPKRK SLAKELEEEE YLLRQCVEKL KSVQGSRTSL VNQLKDALRE QESELENLEA QIQASQEQTE EAQKMQKRLK DEDYVSKPPT
301: IAPGSVSATE TTDNNNSTKS GQASKMTPAS IAAMLTASTS SHMIMQSVLS SFAAEATKTS GLSKPESTVP DSNAFAPSYS NPQNQTPITQ GQGQYHLISN
401: PAAPQQFLKQ PVMNNPYGFG NIPLMPPGLP PPPPPPHMQQ PQITQSNSAQ QQQPQQGSTF QPPGIMYYGA PHHS
101: DKGVVSRLVK IWEDRKVFGS RSKNLRDVML GEDCPLPLDI SKKRPRGSKS SKRDSKSSRT KVSSGGVAEK IASAYHLVVA ENSNEEAEMS KCKSAVKRIR
201: KMEKDVEEAC STVKDNPKRK SLAKELEEEE YLLRQCVEKL KSVQGSRTSL VNQLKDALRE QESELENLEA QIQASQEQTE EAQKMQKRLK DEDYVSKPPT
301: IAPGSVSATE TTDNNNSTKS GQASKMTPAS IAAMLTASTS SHMIMQSVLS SFAAEATKTS GLSKPESTVP DSNAFAPSYS NPQNQTPITQ GQGQYHLISN
401: PAAPQQFLKQ PVMNNPYGFG NIPLMPPGLP PPPPPPHMQQ PQITQSNSAQ QQQPQQGSTF QPPGIMYYGA PHHS
001: MSSVFSDQIL IDKLAKLNSS QQSIETLSHW CIFNRSKAEL IVTTWEKQFH STEMDQKVPL LYLANDILQN SKRQGNEFVQ EFWNVLPKAL KDIVSQGDDN
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
Arabidopsis Description
At5g10060 [Source:UniProtKB/TrEMBL;Acc:Q8GUK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.