CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003657.1-P	Field mustard	cytosol	99.21	98.63
CDX79246	Canola	cytosol	94.7	94.14
CDX88420	Canola	cytosol	85.07	82.32
CDX87474	Canola	cytosol	83.69	80.99
AT1G78120.1	Thale cress	cytosol	80.94	77.74
KRH15375	Soybean	cytosol	23.38	47.6
Os02t0753500-01	Rice	cytosol	24.56	42.81
KRH08675	Soybean	cytosol, mitochondrion, plastid	27.7	41.96
HORVU4Hr1G024490.1	Barley	cytosol	24.75	39.38
CDY08814	Canola	cytosol, plastid	32.42	39.29
PGSC0003DMT400022057	Potato	plastid	33.2	38.67
CDX78366	Canola	cytosol	32.22	36.77
CDX81156	Canola	cytosol	31.04	35.43
KRH62368	Soybean	cytosol	43.81	34.1
GSMUA_Achr11P...	Banana	plastid	38.51	33.5
Solyc04g073940.2.1	Tomato	cytosol	35.17	32.97
KRH53085	Soybean	cytosol	44.99	32.81
KXG30730	Sorghum	cytosol, plastid	37.92	32.71
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	37.52	32.65
PGSC0003DMT400045666	Potato	cytosol	34.77	32.48
Zm00001d018088_P001	Maize	cytosol	37.52	32.37
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	35.95	31.94
CDX85779	Canola	cytosol	35.76	31.65
CDX69861	Canola	cytosol, mitochondrion	34.77	31.61
CDY21634	Canola	cytosol, mitochondrion	34.77	31.61
CDY40077	Canola	cytosol	35.56	31.48
KRH16702	Soybean	nucleus	42.04	30.84
KRH18895	Soybean	cytosol	42.24	30.58
VIT_18s0001g05380.t01	Wine grape	plastid	42.44	30.55
GSMUA_Achr3P24690_001	Banana	cytosol	40.67	30.49
CDY68462	Canola	cytosol	34.58	29.88
HORVU6Hr1G074660.5	Barley	plastid	36.15	29.49
TraesCS6A01G301400.1	Wheat	mitochondrion	34.38	29.46
CDY34224	Canola	cytosol	3.73	27.54
CDY40820	Canola	mitochondrion	14.73	26.69
CDY34222	Canola	cytosol	15.13	25.0
CDY42827	Canola	cytosol	32.61	24.74
CDY61202	Canola	cytosol	32.42	24.59
CDY55390	Canola	cytosol	32.22	24.51
CDY51514	Canola	cytosol	32.02	24.36
CDY25722	Canola	cytosol, plastid	31.83	24.29
CDX71941	Canola	cytosol	31.63	23.89
CDY02514	Canola	cytosol, plastid	31.24	23.73
CDY49237	Canola	cytosol	31.04	23.69
CDY25865	Canola	cytosol	30.06	23.25
CDY45930	Canola	cytosol	29.86	23.07
CDX97619	Canola	cytosol	31.43	22.07
CDX98517	Canola	cytosol	31.24	21.96
CDY34223	Canola	cytosol	13.75	21.47
CDY32327	Canola	cytosol	30.65	21.4
CDY20095	Canola	nucleus	30.45	21.29
CDY39682	Canola	cytosol	9.63	17.69
CDY65185	Canola	cytosol	9.43	17.33
CDX72245	Canola	cytosol	8.25	15.97
CDX85780	Canola	nucleus	9.23	9.92
CDY28190	Canola	extracellular	1.96	9.8
CDX68662	Canola	endoplasmic reticulum, mitochondrion	1.96	9.8
CDY00576	Canola	cytosol	1.18	5.13

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX68030	ProteinID:CDX68030	ProteinID:CDX68030.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00099250001	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF360	SMART:SM00028
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EE8421	SEG:seg

Description

BnaA07g20700D

Coordinates

chrLK031787:+:3435100..3437693

Molecular Weight (calculated)

57239.3 Da

IEP (calculated)

9.956

GRAVY (calculated)

-0.571

Length

509 amino acids

Sequence
(BLAST)

001: MAKSKNISTS QRLGCESLLG CIFESWSPRR RKPSLPEKDR KTKDYLPPKS TTIPNPKTRP RKSTDSSSQS KPRKSSDSAR KSVSSASSRP ESKTFSPNGV
101: MGNIIVKPQP ALNSSDVAQT NSRWEGKTVN YRLCPEDLKR MGNEEYCRGR FGEALVFYER AILADPKTPT YWSNKSAALI SLGRLLEAYD ACEEALRLNP
201: NYERAHQRLA SLQLRLKKAL CHYNQAGKYT ETRHIEQVED VIKCLRRCDE ARRSKGWNIL LKETCSVISY GADSSPRVHA LQTEALLHLQ RQEEAYDVYQ
301: KGTKHFDIDI YIKMFGLPIT SYLLMVGAQV YIAAGRFEDA VTASRQAARL DPSNEEFNAV DRKSRAVAAA RLSGNLLFNA SKFEAACVVY TEGLEQDPTN
401: ALLLCNRAAS SFKIGLYEKA VEDSTLVLNL QPSYRKARRR RADSYAKLGK WQQAIQDYQF LMMETPVDED TRRALAVANV RLRKQIGGNV RFKGYGSGLV
501: VVNEMGVLG

Best Arabidopsis Sequence Match ( AT1G78120.1 )
(BLAST)

001: MAKSKKISTG QIFGCESLLG CIFQSWSPRR RKPSLPEKDH RAKDNLSSKS STTVTNPKIL PRKSTDTSSQ PKKSDSQKPQ QKPKPDENHP RKSSESARKS
101: SDSARKSISS GSSRTESKRF SLNGVMGNII VKPQPAVKTD VTQTKSRWEG KPVNHRLDPE TLKKMGNEEY CRGRFGQALV FYERAISADP KTPTYWSNKS
201: AALISLGRLL EASDACEEAL RLNPTYERAH QRLASLQLRL GEVEKALCHY NEAGKYTETK HIEQVEDVVK CLRRCDEARR SKEWNVALKE TLFAISYGAD
301: SSPRVYALQT EALLHLQRHE EAYSVYQKGT KRFDIDSFIK IFGLSLTSYL LMVGAQVYIA VGRFEDAVTA SRQAARLDPS SEEVNAVARK ARAVASARLS
401: GNLLFNASKF EGASVVYTEG LENDPYNALL LCNRAASRFK LDLFEKAIED CTLALSLQPS YRKARRRRAD SYAKLEKWQH AIQDYELLMM ETPEDEETRR
501: ALTEVNVRFK KQTGGDVRFK GVGSELVVAN

Arabidopsis Description

TPR12TPR12 [Source:UniProtKB/TrEMBL;Acc:A0A178W863]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.