Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH09945 | Soybean | cytosol, endoplasmic reticulum | 17.49 | 79.31 |
| CDX68662 | Canola | endoplasmic reticulum, mitochondrion | 28.9 | 74.51 |
| CDY28190 | Canola | extracellular | 28.52 | 73.53 |
| AT4G30480.2 | Thale cress | cytosol | 70.72 | 67.15 |
| KRH23391 | Soybean | cytosol | 43.73 | 64.25 |
| CDY65185 | Canola | cytosol | 63.88 | 60.65 |
| GSMUA_Achr2P02050_001 | Banana | cytosol | 51.71 | 59.65 |
| CDY39682 | Canola | cytosol | 62.74 | 59.57 |
| KRG99844 | Soybean | cytosol | 59.7 | 58.58 |
| Solyc07g006180.2.1 | Tomato | cytosol | 57.79 | 58.24 |
| TraesCS5D01G341400.1 | Wheat | cytosol | 50.19 | 57.64 |
| TraesCS5A01G336700.1 | Wheat | cytosol | 50.19 | 57.64 |
| TraesCS5B01G335700.1 | Wheat | cytosol | 49.81 | 57.21 |
| Os10t0486900-01 | Rice | cytosol | 50.95 | 56.78 |
| KXG33951 | Sorghum | cytosol | 50.95 | 52.96 |
| Zm00001d034423_P001 | Maize | cytosol | 49.81 | 52.82 |
| PGSC0003DMT400029173 | Potato | cytosol | 58.17 | 52.22 |
| Zm00001d012121_P002 | Maize | cytosol | 50.57 | 52.16 |
| KRH46794 | Soybean | cytosol | 54.37 | 51.81 |
| VIT_11s0037g01020.t01 | Wine grape | cytosol | 46.39 | 50.0 |
| CDY34224 | Canola | cytosol | 3.42 | 13.04 |
| CDY08814 | Canola | cytosol, plastid | 16.35 | 10.24 |
| CDX78366 | Canola | cytosol | 16.35 | 9.64 |
| CDX81156 | Canola | cytosol | 16.35 | 9.64 |
| CDX87474 | Canola | cytosol | 18.25 | 9.13 |
| CDX88420 | Canola | cytosol | 18.25 | 9.13 |
| CDY21634 | Canola | cytosol, mitochondrion | 19.39 | 9.11 |
| CDY25722 | Canola | cytosol, plastid | 22.81 | 9.0 |
| CDX69861 | Canola | cytosol, mitochondrion | 19.01 | 8.93 |
| CDY51514 | Canola | cytosol | 22.43 | 8.82 |
| CDY45930 | Canola | cytosol | 22.05 | 8.8 |
| CDY42827 | Canola | cytosol | 22.43 | 8.79 |
| CDY25865 | Canola | cytosol | 21.67 | 8.66 |
| CDY02514 | Canola | cytosol, plastid | 22.05 | 8.66 |
| CDY61202 | Canola | cytosol | 22.05 | 8.64 |
| CDY49237 | Canola | cytosol | 21.67 | 8.55 |
| CDY55390 | Canola | cytosol | 21.67 | 8.52 |
| CDX71941 | Canola | cytosol | 21.67 | 8.46 |
| CDX79246 | Canola | cytosol | 16.35 | 8.4 |
| CDY68462 | Canola | cytosol | 18.63 | 8.32 |
| CDX68030 | Canola | cytosol | 15.97 | 8.25 |
| CDX85779 | Canola | cytosol | 17.49 | 8.0 |
| CDY40077 | Canola | cytosol | 17.49 | 8.0 |
| CDY34223 | Canola | cytosol | 9.51 | 7.67 |
| CDY20095 | Canola | nucleus | 19.01 | 6.87 |
| CDY32327 | Canola | cytosol | 19.01 | 6.86 |
| CDY40820 | Canola | mitochondrion | 7.22 | 6.76 |
| CDX98517 | Canola | cytosol | 17.49 | 6.35 |
| CDX97619 | Canola | cytosol | 17.11 | 6.21 |
| CDY34222 | Canola | cytosol | 7.22 | 6.17 |
| CDX85780 | Canola | nucleus | 10.27 | 5.7 |
| CDY00576 | Canola | cytosol | 2.28 | 5.13 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.2 | EnsemblPlants:CDX72245 | ProteinID:CDX72245 | ProteinID:CDX72245.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00099713001 | InterPro:IPR011990 | InterPro:IPR013026 |
| InterPro:IPR019734 | PFAM:PF00515 | PFAM:PF07719 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR22904 |
| PANTHER:PTHR22904:SF356 | SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 |
| InterPro:TPR_2 | InterPro:TPR_repeat | UniParc:UPI0004EDF041 | SEG:seg | : | : |
Description
BnaC07g42670D
Coordinates
chrLK031796:+:234801..235981
Molecular Weight (calculated)
29882.5 Da
IEP (calculated)
4.609
GRAVY (calculated)
-0.578
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLIEQETLI KDEPNLPSSS SPQIAATEAK QVHDGDDSDG FETASEREED DSINDAVTSQ EEPPHQMKLV ERLVKVCFFF LIWKEKAMKE ANEAKVEGNS
101: MFVNGLYEEA LSKYDLALEL VQEFPDCTEL RSICRLNRGV CLLKLGKYEE TIKECTKALE LNPTYFKALV RRAEAHEKLE HFEEAVADLK KILELDPSND
201: QARKGIRRLE PLAAEKREKM KEEAITKLKE MGNSILGRFG MSIDNFNAVR DPNTGSYSLS FQN
101: MFVNGLYEEA LSKYDLALEL VQEFPDCTEL RSICRLNRGV CLLKLGKYEE TIKECTKALE LNPTYFKALV RRAEAHEKLE HFEEAVADLK KILELDPSND
201: QARKGIRRLE PLAAEKREKM KEEAITKLKE MGNSILGRFG MSIDNFNAVR DPNTGSYSLS FQN
001: MVLIESSESE DEILIKNEPK PASSSSPQPT ETKQVDGDDS DGFETASERE ISDEEGEEDG TKNDAVTSQE EPQHSEKKEE QIELMSEGEA IVDDGSNKEK
101: ALAEANEAKA EGNKLFVNGL YEEALSKYAF ALELVQELPE SIELRSICYL NRGVCFLKLG KCEETIKECT KALELNPTYN KALVRRAEAH EKLEHFEDAV
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEAIT KLKEMGNSIL GRFGMSVDNF KAVKDPNTGS YSLSFQN
101: ALAEANEAKA EGNKLFVNGL YEEALSKYAF ALELVQELPE SIELRSICYL NRGVCFLKLG KCEETIKECT KALELNPTYN KALVRRAEAH EKLEHFEDAV
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEAIT KLKEMGNSIL GRFGMSVDNF KAVKDPNTGS YSLSFQN
Arabidopsis Description
TPR1AT4G30480 protein [Source:UniProtKB/TrEMBL;Acc:Q9M0B2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.