CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09945	Soybean	cytosol, endoplasmic reticulum	18.66	86.21
KRH23391	Soybean	cytosol	52.99	79.33
Bra011197.1-P	Field mustard	cytosol	24.25	79.27
KRH46794	Soybean	cytosol	79.48	77.17
CDX68662	Canola	endoplasmic reticulum, mitochondrion	26.49	69.61
CDY28190	Canola	extracellular	26.12	68.63
GSMUA_Achr2P02050_001	Banana	cytosol	55.6	65.35
TraesCS5A01G336700.1	Wheat	cytosol	55.6	65.07
TraesCS5B01G335700.1	Wheat	cytosol	55.22	64.63
TraesCS5D01G341400.1	Wheat	cytosol	54.85	64.19
Os10t0486900-01	Rice	cytosol	56.34	63.98
Solyc07g006180.2.1	Tomato	cytosol	59.33	60.92
Zm00001d034423_P001	Maize	cytosol	55.6	60.08
AT4G30480.2	Thale cress	cytosol	61.94	59.93
CDX72245	Canola	cytosol	58.58	59.7
KXG33951	Sorghum	cytosol	55.6	58.89
Zm00001d012121_P002	Maize	cytosol	54.48	57.25
Bra032136.1-P	Field mustard	cytosol	57.84	55.96
CDY39682	Canola	cytosol	57.46	55.6
CDY65185	Canola	cytosol	57.09	55.23
PGSC0003DMT400029173	Potato	cytosol	59.7	54.61
VIT_11s0037g01020.t01	Wine grape	cytosol	48.88	53.69
KRH08675	Soybean	cytosol, mitochondrion, plastid	13.43	10.71
KRH62368	Soybean	cytosol	23.51	9.63
KRH16702	Soybean	nucleus	24.25	9.37
KRH59356	Soybean	plastid	14.93	9.32
KRH53085	Soybean	cytosol	23.88	9.17
KRH21985	Soybean	cytosol	23.51	9.1
KRH18895	Soybean	cytosol	23.51	8.96
KRH15375	Soybean	cytosol	8.21	8.8
KRH27330	Soybean	cytosol	22.76	8.74
KRH26223	Soybean	nucleus	22.01	8.73
KRH22291	Soybean	plastid	18.66	8.56
KRH55099	Soybean	nucleus	21.64	8.55
KRG97591	Soybean	plastid	16.79	8.21
KRH43206	Soybean	cytosol, plastid	16.79	8.21
KRH31282	Soybean	plastid	17.54	8.08
KRH27037	Soybean	nucleus	19.78	7.85

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100808386	MapMan:35.2	EMBL:ACUP02011317	EMBL:BT095931	UniProt:C6TEB0
ncoils:Coil	EnsemblPlantsGene:GLYMA_18G174600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:KRG99844	ProteinID:KRG99844	ProteinID:KRG99844.1	PFAM:PF00515
PFAM:PF13181	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF356	SMART:SM00028
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI0001B16AB9
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:41376665..41381356

Molecular Weight (calculated)

29976.8 Da

IEP (calculated)

4.580

GRAVY (calculated)

-0.878

Length

268 amino acids

Sequence
(BLAST)

001: MVLIEHEESK QRNANPSNAA NDDSDGFETA SDTDLAGEGD DSGAGIPEEQ NRTEQSHTEK QTEQEPEHDA PRSSESSENN ALISEEESRQ KALNQANEAK
101: VEGNKLFVEG KYEEALLQYE LALQAAPDMP SSVEIRSICH SNRGVCFLKL GKYDNTIKEC TKALELNPVY IKALVRRGEA HEKLEHFEEA IADMKKILEI
201: DLSNDQARKT IRQLEPLAAE KREKMKEEMI AKLKDMGNSV LGRFGMSVDN FKAVKDPNTG SYSISFQR

Best Arabidopsis Sequence Match ( AT4G30480.2 )
(BLAST)

001: MVLIESSESE DEILIKNEPK PASSSSPQPT ETKQVDGDDS DGFETASERE ISDEEGEEDG TKNDAVTSQE EPQHSEKKEE QIELMSEGEA IVDDGSNKEK
101: ALAEANEAKA EGNKLFVNGL YEEALSKYAF ALELVQELPE SIELRSICYL NRGVCFLKLG KCEETIKECT KALELNPTYN KALVRRAEAH EKLEHFEDAV
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEAIT KLKEMGNSIL GRFGMSVDNF KAVKDPNTGS YSLSFQN

Arabidopsis Description

TPR1AT4G30480 protein [Source:UniProtKB/TrEMBL;Acc:Q9M0B2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.