Factsheet for VIT_11s0037g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23391	Soybean	cytosol	40.98	55.87
GSMUA_Achr2P02050_001	Banana	cytosol	49.59	53.07
Os10t0486900-01	Rice	cytosol	51.23	52.97
TraesCS5B01G335700.1	Wheat	cytosol	48.36	51.53
TraesCS5A01G336700.1	Wheat	cytosol	48.36	51.53
TraesCS5D01G341400.1	Wheat	cytosol	47.95	51.09
Solyc07g006180.2.1	Tomato	cytosol	53.28	49.81
KXG33951	Sorghum	cytosol	51.64	49.8
KRG99844	Soybean	cytosol	53.69	48.88
Zm00001d034423_P001	Maize	cytosol	49.59	48.79
Zm00001d012121_P002	Maize	cytosol	50.0	47.84
CDY65185	Canola	cytosol	53.69	47.29
Bra032136.1-P	Field mustard	cytosol	53.69	47.29
CDY39682	Canola	cytosol	53.28	46.93
CDX72245	Canola	cytosol	50.0	46.39
AT4G30480.2	Thale cress	cytosol	51.64	45.49
Bra011197.1-P	Field mustard	cytosol	15.16	45.12
PGSC0003DMT400029173	Potato	cytosol	54.1	45.05
KRH46794	Soybean	cytosol	50.41	44.57
CDX68662	Canola	endoplasmic reticulum, mitochondrion	18.03	43.14
CDY28190	Canola	extracellular	18.03	43.14
KRH09945	Soybean	cytosol, endoplasmic reticulum	9.02	37.93
VIT_18s0001g09830.t01	Wine grape	cytosol	13.52	12.5
VIT_08s0007g01480.t01	Wine grape	cytosol	20.49	12.47
VIT_18s0001g05380.t01	Wine grape	plastid	23.36	8.06
VIT_00s0304g00060.t01	Wine grape	plastid	22.54	7.71
VIT_19s0014g01470.t01	Wine grape	cytosol	21.31	7.5
VIT_12s0028g02240.t01	Wine grape	cytosol	19.67	6.76

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100250133	wikigene:100250133	MapMan:35.2	EMBL:AM466128	ProteinID:CAN74800
ProteinID:CAN74800.1	ProteinID:CCB59797	ProteinID:CCB59797.1	ncoils:Coil	UniProt:F6HYN3	EMBL:FN596499
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0051879	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	EntrezGene:LOC100250133	wikigene:LOC100250133	PFAM:PF00515	PFAM:PF07719	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF356	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_2	InterPro:TPR_repeat	UniParc:UPI0002108319	ArrayExpress:VIT_11s0037g01020
EnsemblPlantsGene:VIT_11s0037g01020	EnsemblPlants:VIT_11s0037g01020.t01	unigene:Vvi.4639	RefSeq:XP_002272630	RefSeq:XP_002272630.1	SEG:seg

Description

No Description!

Coordinates

chr11:-:9934652..9943095

Molecular Weight (calculated)

27165.6 Da

IEP (calculated)

4.302

GRAVY (calculated)

-0.845

Length

244 amino acids

Sequence
(BLAST)

001: MVVIEPAIES EETNLNPKQA SSSTTTPPAT SAESAKDASD GFETASEGEP ETDDEESDGG AGDEQQQQQV SSCEDALNDD QLKEKALAQA NDAKMEGNKL
101: FGAGQYQEAL SQYELALQVA PEMPSSVEIR SICHANQAIC FLKLEKIEDA IKECTKALEL NPTYMKALTR RAEAHEKLEH FEEALADTKK ILELDPSNSQ
201: ARRAIPRLEQ LAKEKQEKLK EEMIGKTNPY LQREIMQKMD RERF

Best Arabidopsis Sequence Match ( AT4G30480.2 )
(BLAST)

001: MVLIESSESE DEILIKNEPK PASSSSPQPT ETKQVDGDDS DGFETASERE ISDEEGEEDG TKNDAVTSQE EPQHSEKKEE QIELMSEGEA IVDDGSNKEK
101: ALAEANEAKA EGNKLFVNGL YEEALSKYAF ALELVQELPE SIELRSICYL NRGVCFLKLG KCEETIKECT KALELNPTYN KALVRRAEAH EKLEHFEDAV
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEAIT KLKEMGNSIL GRFGMSVDNF KAVKDPNTGS YSLSFQN

Arabidopsis Description

TPR1AT4G30480 protein [Source:UniProtKB/TrEMBL;Acc:Q9M0B2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.