Factsheet for VIT_18s0001g05380.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62368	Soybean	cytosol	51.77	55.96
KRH18895	Soybean	cytosol	54.31	54.62
KRH16702	Soybean	nucleus	52.9	53.89
KRH53085	Soybean	cytosol	53.04	53.72
VIT_00s0304g00060.t01	Wine grape	plastid	53.75	53.3
KRH15375	Soybean	cytosol	18.81	53.2
PGSC0003DMT400022057	Potato	plastid	32.39	52.4
Os02t0753500-01	Rice	cytosol	21.64	52.4
KRH08675	Soybean	cytosol, mitochondrion, plastid	23.9	50.3
PGSC0003DMT400045666	Potato	cytosol	37.62	48.81
Solyc04g073940.2.1	Tomato	cytosol	37.34	48.62
GSMUA_Achr3P24690_001	Banana	cytosol	45.12	46.98
HORVU4Hr1G024490.1	Barley	cytosol	21.07	46.56
GSMUA_Achr11P...	Banana	plastid	37.77	45.64
AT1G78120.1	Thale cress	cytosol	33.1	44.15
VIT_18s0001g09830.t01	Wine grape	cytosol	16.27	43.56
Bra003657.1-P	Field mustard	cytosol	31.4	43.36
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	35.5	42.91
CDX79246	Canola	cytosol	30.98	42.77
CDX68030	Canola	cytosol	30.55	42.44
CDX88420	Canola	cytosol	31.54	42.4
Bra015628.1-P	Field mustard	cytosol	31.54	42.4
CDX87474	Canola	cytosol	31.4	42.21
VIT_08s0007g01480.t01	Wine grape	cytosol	23.62	41.65
KXG30730	Sorghum	cytosol, plastid	34.37	41.19
Zm00001d018088_P001	Maize	cytosol	34.09	40.85
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	33.1	40.84
TraesCS6A01G301400.1	Wheat	mitochondrion	32.11	38.22
HORVU6Hr1G074660.5	Barley	plastid	32.39	36.7
VIT_19s0014g01470.t01	Wine grape	cytosol	35.36	36.08
VIT_12s0028g02240.t01	Wine grape	cytosol	34.94	34.79
VIT_11s0037g01020.t01	Wine grape	cytosol	8.06	23.36

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100242128	wikigene:100242128	Gene3D:3.40.30.10	MapMan:35.1	ProteinID:CCB45562
ProteinID:CCB45562.1	ncoils:Coil	UniProt:F6H0W5	EMBL:FN595227	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR013766	InterPro:IPR019734	EntrezGene:LOC100242128	wikigene:LOC100242128	PFAM:PF00085	PFAM:PF13181
PFAM:PF13414	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF360
SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF52833	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0001985423	ArrayExpress:VIT_18s0001g05380	EnsemblPlantsGene:VIT_18s0001g05380	EnsemblPlants:VIT_18s0001g05380.t01
RefSeq:XP_002284180	RefSeq:XP_002284180.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:4284177..4287720

Molecular Weight (calculated)

79027.1 Da

IEP (calculated)

9.906

GRAVY (calculated)

-0.584

Length

707 amino acids

Sequence
(BLAST)

001: MTKCSVDSEL GCSLMEGIFQ RRSFWPKKTS VRPLPTNSNS TLKVTSPSDS KGRHGGSRET ASLNSISPKP PPKLDEKLVT TPNLVRSRPS TSSHKSQGAR
101: PSDAARNSSS SSATSSLKQQ SQSQELTDMK RLRREPNGLY TEPNRASTDH HQSYESKALV PTSSGNVMPL GHLGNLKPLR TGNSMITDLP DSTNKTRYYH
201: QRKLSDSRIG SNGVMGNITR KPSNENPKSG GRFLGLLNKL DPEALKSMGN EEYKQGRFKE ALALYNQAIA LNANKASYHS NKSAALIGLG HLMEAVIECR
301: EAIQIEPSYH RAHHRLATLY LRLGEAEKAL NHYKYSSPTD SEYIAKAQAL QTHLSRCIEA RNLRDWNTLL KEARCAISSG ADSAPQIYAF QAEALLKLHR
401: HQEAYATFRK GPKFQIDSCT QFFGPAASAY MLIIQAQLYM TMGRLEDAVA LAQKAARLDS SNHEVTTVLR RVLAVESARL RGNQLFNASK FLEACVTYNE
501: GLDHDPYNTI LLCNRAACRS KLGQFEKAVE DCTMALIVQP SYSKARLRRA NCNAKLERWE ASIQDYEMLI RETPGDEEVG RALFEAKIQL KKQRGEDIKD
601: MKFGSNLVFI SNNERFRHFV TSPGMSVVLF CNKTSHKQVL QLLEQVCKRY PSVYFLKVEV EDHPYLAKSE SVSSVPAFKI YKNGSRVKEI PGNNRELLES
701: SVKLYSS

Best Arabidopsis Sequence Match ( AT5G65160.1 )
(BLAST)

001: MEENTAVAAA ERRSGCGLLS VMFGRRGLWS KKSTAVDNGS QKSTSTAATA TSNIQFTKSP GTELKKPRDD QKVSAEPIQN NKIQNNQNHN QRSVVPSKPS
101: SNQYPNNHQL GTYENHQRSS YNNNSNSVDP YRGGGGQRKV PREAIGLSGE LESMITDHQK AKGTNGLVRA SSSNIMLYGN LGNLNQTGPV TAGVNYGNNN
201: GYGVKRTTMG AATATTTKSQ DQSGSLCRAI STRMDPETLK IMGNEDYKNG NFAEALALYD AAIAIDPNKA AYRSNKSAAL TALGRILDAV FECREAIRIE
301: PHYHRAHHRL GNLYLRLGEV EKSIYHFKHS GPEADREDIA KAKTVQTHLN KCTEAKRLRD WNGLITETTN TISSGADAAP QVYALQAEAL LKTHRHQEAD
401: DALSRCPVFD IDASTRYYGP VGYAGFLVVR AQVHLASGRF DEAVEAIQRA GKLDGNNREV IMISRRAQAV TEARFKGNEL FKSGRFQEAC AAYGEGLDHD
501: PRNSVLLCNR AACRSKLGQF DKSIEDCTAA LSVRPGYGKA RLRRADCNAK IEKWELAVGD YEILKKESPE DEQVIRGLSE AQQQLMKRSG QDS

Arabidopsis Description

TPR14At5g65160 [Source:UniProtKB/TrEMBL;Acc:Q9FJQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.