Factsheet for Solyc04g073940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
nucleus 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045666	Potato	cytosol	94.29	93.94
Os02t0753500-01	Rice	cytosol	24.31	45.21
KRH08675	Soybean	cytosol, mitochondrion, plastid	26.34	42.56
KRH15375	Soybean	cytosol	18.23	39.6
HORVU4Hr1G024490.1	Barley	cytosol	23.2	39.38
VIT_18s0001g05380.t01	Wine grape	plastid	48.62	37.34
GSMUA_Achr11P...	Banana	plastid	39.96	37.09
Solyc04g055000.2.1	Tomato	cytosol	39.78	36.8
AT1G78120.1	Thale cress	cytosol	35.54	36.42
Bra003657.1-P	Field mustard	cytosol	33.89	35.94
CDX79246	Canola	cytosol	33.33	35.35
CDX88420	Canola	cytosol	34.07	35.17
Bra015628.1-P	Field mustard	cytosol	34.07	35.17
CDX68030	Canola	cytosol	32.97	35.17
CDX87474	Canola	cytosol	33.89	34.98
KRH62368	Soybean	cytosol	41.07	34.1
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	36.46	33.85
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	35.17	33.33
KXG30730	Sorghum	cytosol, plastid	35.91	33.05
Zm00001d018088_P001	Maize	cytosol	35.91	33.05
KRH18895	Soybean	cytosol	42.17	32.57
KRH16702	Soybean	nucleus	41.44	32.42
KRH53085	Soybean	cytosol	40.7	31.66
TraesCS6A01G301400.1	Wheat	mitochondrion	33.33	30.47
GSMUA_Achr3P24690_001	Banana	cytosol	37.94	30.34
HORVU6Hr1G074660.5	Barley	plastid	34.44	29.97
Solyc10g007220.1.1	Tomato	cytosol	25.41	27.33
Solyc10g007430.1.1	Tomato	cytosol, plastid	18.97	27.25
Solyc10g007230.1.1	Tomato	cytosol	27.99	25.5
Solyc10g007420.2.1	Tomato	cytosol	19.52	24.94
Solyc07g062580.2.1	Tomato	cytosol	31.86	24.68
Solyc10g007240.1.1	Tomato	cytosol	26.7	24.41
Solyc07g006180.2.1	Tomato	cytosol	10.31	21.46
Solyc10g007250.1.1	Tomato	cytosol	10.68	20.79

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	UniProt:K4BTT2	PFAM:PF00515	PFAM:PF13176	PFAM:PF13432
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF360	SMART:SM00028	SUPFAM:SSF48452
EnsemblPlantsGene:Solyc04g073940.2	EnsemblPlants:Solyc04g073940.2.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat
UniParc:UPI000276719A	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:59949691..59951735

Molecular Weight (calculated)

61377.2 Da

IEP (calculated)

9.953

GRAVY (calculated)

-0.487

Length

543 amino acids

Sequence
(BLAST)

001: MAKIGEKSVE IQLGCGLVAA IFQRGNCKPI KQPVSQISKK KLSKPQPKQT SITLRNSISQ DRKHVRRSMS DDTRSCSKIN QSSNASSRKK MSQVVNLVPN
101: THNLRRQSTS DLSANGTLNR ASSTGNIMLL GQSGNLKQQK RIQHVSTDKK FILQKGRVLM GNIVNKLDPD VLKSMGNEHY KNGRFEQAIA LYNQAIAINP
201: KNACYYSNKS AALLSLNRLI EAVIECREAI QLDPFYYNAQ YRLARLYLRL GEAEKALEHY EKSGPKVDRR DISEAQNLKR MIHSCIEAHS VKDYVTLLHM
301: SENALSSGAD SAPQIFAMRA EALMKLHRHE EAYTIIQKGP DFKTCLSTRI IGSAKTAYFL MIKAQVYTLV GRFDDGISTA QEAAKLDISN EIIAILRRIK
401: GVASARVKGN ELFKESKYIE ACCMYTEGLE QDPYNSVLLF NRATCRIKLG QFEKGLEDCN AALVLRPSYT KARVRRADCY VKLERWEAAI QEFEMMLQEK
501: QGDEEVIKRA LIDAKIQLKR EREEDQKQRE LSNDSNLVLV ISN

Best Arabidopsis Sequence Match ( AT5G65160.1 )
(BLAST)

001: MEENTAVAAA ERRSGCGLLS VMFGRRGLWS KKSTAVDNGS QKSTSTAATA TSNIQFTKSP GTELKKPRDD QKVSAEPIQN NKIQNNQNHN QRSVVPSKPS
101: SNQYPNNHQL GTYENHQRSS YNNNSNSVDP YRGGGGQRKV PREAIGLSGE LESMITDHQK AKGTNGLVRA SSSNIMLYGN LGNLNQTGPV TAGVNYGNNN
201: GYGVKRTTMG AATATTTKSQ DQSGSLCRAI STRMDPETLK IMGNEDYKNG NFAEALALYD AAIAIDPNKA AYRSNKSAAL TALGRILDAV FECREAIRIE
301: PHYHRAHHRL GNLYLRLGEV EKSIYHFKHS GPEADREDIA KAKTVQTHLN KCTEAKRLRD WNGLITETTN TISSGADAAP QVYALQAEAL LKTHRHQEAD
401: DALSRCPVFD IDASTRYYGP VGYAGFLVVR AQVHLASGRF DEAVEAIQRA GKLDGNNREV IMISRRAQAV TEARFKGNEL FKSGRFQEAC AAYGEGLDHD
501: PRNSVLLCNR AACRSKLGQF DKSIEDCTAA LSVRPGYGKA RLRRADCNAK IEKWELAVGD YEILKKESPE DEQVIRGLSE AQQQLMKRSG QDS

Arabidopsis Description

TPR14At5g65160 [Source:UniProtKB/TrEMBL;Acc:Q9FJQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.