Factsheet for Solyc04g055000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053133	Potato	cytosol, plastid	95.57	93.66
KRH59356	Soybean	plastid	42.76	58.51
CDY08814	Canola	cytosol, plastid	41.57	58.1
KRH43206	Soybean	cytosol, plastid	50.94	54.56
KRG97591	Soybean	plastid	50.43	54.01
Bra006046.1-P	Field mustard	cytosol	40.37	53.14
CDX78366	Canola	cytosol	40.37	53.14
CDX81156	Canola	cytosol	40.2	52.91
KRH31282	Soybean	plastid	51.79	52.23
Bra024360.1-P	Field mustard	mitochondrion	50.43	50.51
AT5G10090.1	Thale cress	cytosol	51.11	50.51
AT5G65160.1	Thale cress	cytosol	50.6	50.08
CDY68462	Canola	cytosol	50.09	49.92
CDX69861	Canola	cytosol, mitochondrion	47.53	49.82
Bra009058.1-P	Field mustard	cytosol, mitochondrion	47.53	49.82
CDY21634	Canola	cytosol, mitochondrion	47.19	49.46
CDY40077	Canola	cytosol	48.04	49.04
VIT_00s0304g00060.t01	Wine grape	plastid	59.28	48.81
CDX85779	Canola	cytosol	47.7	48.7
Os02t0753500-01	Rice	cytosol	23.17	46.58
GSMUA_Achr11P...	Banana	plastid	43.78	43.93
HORVU4Hr1G024490.1	Barley	cytosol	23.68	43.44
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	40.89	41.88
KXG30730	Sorghum	cytosol, plastid	41.91	41.69
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	41.4	41.54
GSMUA_Achr3P24690_001	Banana	cytosol	46.85	40.5
Zm00001d018088_P001	Maize	cytosol	40.2	40.0
Solyc04g073940.2.1	Tomato	cytosol	36.8	39.78
TraesCS6A01G301400.1	Wheat	mitochondrion	39.01	38.55
HORVU6Hr1G074660.5	Barley	plastid	40.37	37.98
Solyc10g007430.1.1	Tomato	cytosol, plastid	19.76	30.69
Solyc07g062580.2.1	Tomato	cytosol	32.71	27.39
Solyc10g007240.1.1	Tomato	cytosol	27.6	27.27
Solyc10g007230.1.1	Tomato	cytosol	27.26	26.85
Bra028602.1-P	Field mustard	cytosol	47.7	25.71
Solyc10g007220.1.1	Tomato	cytosol	21.81	25.35
Solyc10g007420.2.1	Tomato	cytosol	18.23	25.18
Solyc10g007250.1.1	Tomato	cytosol	8.86	18.64
Solyc07g006180.2.1	Tomato	cytosol	6.81	15.33

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	UniProt:K4BSP8	PFAM:PF00515	PFAM:PF13432	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF360	SMART:SM00028	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc04g055000.2
EnsemblPlants:Solyc04g055000.2.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI0002765A51
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:53530227..53533608

Molecular Weight (calculated)

64015.6 Da

IEP (calculated)

9.593

GRAVY (calculated)

-0.670

Length

587 amino acids

Sequence
(BLAST)

001: MGDERKTGCG LLNAVFGRKT MWTKRSTSTG SLPTPNSSNG NNLTRSSSTQ NSKKHRNGSN EAFLDNEKQA DRIIPRPNPN QSKVAANKGN VQGAAAAPVY
101: NQQKTNGQGY NNQGRKVVPP STGISGELEN MIQDHQRSNG ANTLVRASSS NVMLFGNLGN IRQQGGGNAT TTSTANHVLD YLPRTAKEEP QQQPSQNGKY
201: PTSVMGNVVK KKGDQEQGKT GGSVSLCRAL STRMDPEQLK ILGNEDYKNG RFAEALALYD AAISIDPNKA SYRSNKSAAL TALGRLLEAV FECREAISID
301: PHYQRAHNRL ATLCVRLGDT EKAMYHYKLA ASEADPDVVT KSKSIQMHLS KCTEAKRQRD WNTLLKESAL AISAGADSAP QIFALKAEAL VKLHRYHEAD
401: QTLKHGPNFD IDECIKFFGP IGNAGLLVIQ AQVDMAAGRI DDALAAAQRA SQLDGNNKEV NMIVRRTRGV ASARTKGNEL FKGGKYGDAS VAYGEGLEHD
501: PHNSVLLCNR AACRSKLGQF EKALEDCNTA LNVRPSFTKA RLRKADCYFK MGKWEACVQE CEVLIKETPE NEDVGQMIKD AQQQLKK

Best Arabidopsis Sequence Match ( AT5G65160.1 )
(BLAST)

001: MEENTAVAAA ERRSGCGLLS VMFGRRGLWS KKSTAVDNGS QKSTSTAATA TSNIQFTKSP GTELKKPRDD QKVSAEPIQN NKIQNNQNHN QRSVVPSKPS
101: SNQYPNNHQL GTYENHQRSS YNNNSNSVDP YRGGGGQRKV PREAIGLSGE LESMITDHQK AKGTNGLVRA SSSNIMLYGN LGNLNQTGPV TAGVNYGNNN
201: GYGVKRTTMG AATATTTKSQ DQSGSLCRAI STRMDPETLK IMGNEDYKNG NFAEALALYD AAIAIDPNKA AYRSNKSAAL TALGRILDAV FECREAIRIE
301: PHYHRAHHRL GNLYLRLGEV EKSIYHFKHS GPEADREDIA KAKTVQTHLN KCTEAKRLRD WNGLITETTN TISSGADAAP QVYALQAEAL LKTHRHQEAD
401: DALSRCPVFD IDASTRYYGP VGYAGFLVVR AQVHLASGRF DEAVEAIQRA GKLDGNNREV IMISRRAQAV TEARFKGNEL FKSGRFQEAC AAYGEGLDHD
501: PRNSVLLCNR AACRSKLGQF DKSIEDCTAA LSVRPGYGKA RLRRADCNAK IEKWELAVGD YEILKKESPE DEQVIRGLSE AQQQLMKRSG QDS

Arabidopsis Description

TPR14At5g65160 [Source:UniProtKB/TrEMBL;Acc:Q9FJQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.