CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69861	Canola	cytosol, mitochondrion	98.75	98.75
CDY40077	Canola	cytosol	83.21	81.04
CDX85779	Canola	cytosol	83.04	80.87
CDX78366	Canola	cytosol	63.39	79.6
CDX81156	Canola	cytosol	62.86	78.92
AT5G10090.1	Thale cress	cytosol	81.25	76.6
CDY08814	Canola	cytosol, plastid	55.0	73.33
CDY68462	Canola	cytosol	69.29	65.87
KRH59356	Soybean	plastid	40.36	52.68
KRG97591	Soybean	plastid	49.64	50.73
KRH43206	Soybean	cytosol, plastid	49.46	50.55
KRH31282	Soybean	plastid	51.96	50.0
Solyc04g055000.2.1	Tomato	cytosol	49.46	47.19
PGSC0003DMT400053133	Potato	cytosol, plastid	49.11	45.91
Os02t0753500-01	Rice	cytosol	23.75	45.55
VIT_00s0304g00060.t01	Wine grape	plastid	53.39	41.94
HORVU4Hr1G024490.1	Barley	cytosol	23.21	40.62
GSMUA_Achr11P...	Banana	plastid	41.43	39.66
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	39.11	38.22
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	39.82	38.12
Zm00001d018088_P001	Maize	cytosol	40.0	37.97
KXG30730	Sorghum	cytosol, plastid	39.64	37.63
TraesCS6A01G301400.1	Wheat	mitochondrion	37.86	35.69
CDX88420	Canola	cytosol	33.21	35.36
CDX87474	Canola	cytosol	33.21	35.36
CDX79246	Canola	cytosol	32.14	35.16
CDX68030	Canola	cytosol	31.61	34.77
HORVU6Hr1G074660.5	Barley	plastid	38.04	34.13
GSMUA_Achr3P24690_001	Banana	cytosol	40.71	33.58
CDY34224	Canola	cytosol	3.75	30.43
CDY49237	Canola	cytosol	33.21	27.89
CDX71941	Canola	cytosol	33.04	27.45
CDY51514	Canola	cytosol	32.68	27.35
CDY45930	Canola	cytosol	32.14	27.31
CDY42827	Canola	cytosol	32.5	27.12
CDY61202	Canola	cytosol	32.32	26.97
CDY25865	Canola	cytosol	31.61	26.9
CDY55390	Canola	cytosol	31.96	26.76
CDY25722	Canola	cytosol, plastid	31.61	26.54
CDY02514	Canola	cytosol, plastid	31.25	26.12
CDY40820	Canola	mitochondrion	12.86	25.62
CDY34222	Canola	cytosol	13.75	25.0
CDY34223	Canola	cytosol	13.57	23.31
CDX98517	Canola	cytosol	28.93	22.38
CDX97619	Canola	cytosol	28.39	21.93
CDY32327	Canola	cytosol	28.21	21.67
CDY20095	Canola	nucleus	27.68	21.29
CDX72245	Canola	cytosol	9.11	19.39
CDY65185	Canola	cytosol	8.93	18.05
CDY39682	Canola	cytosol	8.21	16.61
CDX85780	Canola	nucleus	10.36	12.24
CDX68662	Canola	endoplasmic reticulum, mitochondrion	1.43	7.84
CDY28190	Canola	extracellular	1.43	7.84
CDY00576	Canola	cytosol	0.36	1.71

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078G8A6	EnsemblPlants:CDY21634	ProteinID:CDY21634	ProteinID:CDY21634.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00016110001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF13181	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904
PANTHER:PTHR22904:SF360	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI0004EEF87D	SEG:seg	:	:	:	:

Description

BnaC09g46580DBnaC09g46580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8A6]

Coordinates

chrLK032122:-:573720..575715

Molecular Weight (calculated)

62441.4 Da

IEP (calculated)

9.827

GRAVY (calculated)

-0.621

Length

560 amino acids

Sequence
(BLAST)

001: MAENQAEKRS RRGLLGFVFG RRGLWSKKCT ADNGNKTPMR SSNASAPCTS NIQFTKSPGN ELNSKKLQEY KVSPEPIQNQ TQTQIQRPIS KPLSNQYPNN
101: NPGPVQQQAR KVVPRESIGL SGELESMIMD NQKAKGMMFG SLGNLKQPGT TAVGNQTTVQ NSGYGRKTME GERQTPVRPI SVSNNQDQSG SLCRAISTRM
201: DPETLKIMGN EDYKNGNFVE ALALYDAAIA IDPKKAAYRS NKSAALTALG RILEAVFECR EAIRMEPHYH RAHHRLANLY LRLGEVENSI YHIKRSGPEA
301: DQEDILKAKT VQMHLNKCTE AKRLRDWNNL IKETKNTIAS GADAATQVYA LQAEAFLKSY RHQEADDALS RCPVFDVEMN TKYYGPIGYA GFLVVWAQVH
401: MSLGRFGEAV EAIQLAAKLD RNNREVSMVL RRVQAVTPAR SKGNDFFKAG RFQEASAAYG EVLEHDSRNS VLLCNRAACL FKMGQFDRAI GDSTAALAVR
501: PAYAKARLRR ADCNAKLGNW ELAVGDYEIL RKETPEDDQV IRGLMEAQNH LVKRRGHENL

Best Arabidopsis Sequence Match ( AT5G10090.1 )
(BLAST)

001: MADNPVEKKS RCRFLGFVFN RRGLWSKKCP ADNGSHKSTM SSSNASTATA TTANIQFTKS PCTEFNPRKL QENKVLPEPI EVQNQVQRPV SKPSSHQYPN
101: NNQLGSNGNN QPSNNNQGPV QQQQARKVPR EAIGLSGELE SMIIDNQKAK GNNGSMVRAS SSNVMLFGNL GNLKQPGPSG GNQTTIQNNG YGNTGGGYGV
201: KKTLEEERKT SVAQIPASNN QDQSGSLCRA ISTRMDPETL KIMGNEDYKN GNFAEALALY EAAISIDPKK ASYRSNKSAA LTALGRILEA VFECREAIRI
301: DPHYHRAHHR LANLYLRLGE VENSIYHFKH AGPEADQEDI SKAKMVQTHL NKCTEAKRLR DWNTLIKETE NTITTGADAA PQVYALQAEA FLKTYRHQEA
401: DDALSRCPVF DGEMSTKYYG SIGYAGFLVV WAQVHMASGR FVEAVEAIQR AGKLDGNNRE VSMVLRRAQA VTAARSRGND FFKAGRFQEA CTAYGEGLDH
501: DSRNSVLLCN RAACLSKMGQ FDRAVEDTSA ALAVRPGYTK ARLRRADCNA KLGNWESAVG DYEILRKETP EDEEVIKGLS EAQKQLVKRR GHDS

Arabidopsis Description

TPR13Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LX19]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.