Factsheet for AT5G10090.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85779	Canola	cytosol	80.13	82.78
CDY40077	Canola	cytosol	79.8	82.43
Bra006046.1-P	Field mustard	cytosol	61.78	82.29
CDX78366	Canola	cytosol	61.78	82.29
CDX81156	Canola	cytosol	61.28	81.61
Bra009058.1-P	Field mustard	cytosol, mitochondrion	76.94	81.61
CDX69861	Canola	cytosol, mitochondrion	76.94	81.61
CDY21634	Canola	cytosol, mitochondrion	76.6	81.25
AT5G65160.1	Thale cress	cytosol	72.22	72.34
KRH59356	Soybean	plastid	40.74	56.41
KRH43206	Soybean	cytosol, plastid	49.49	53.65
KRG97591	Soybean	plastid	48.32	52.37
KRH31282	Soybean	plastid	51.18	52.23
Solyc04g055000.2.1	Tomato	cytosol	50.51	51.11
PGSC0003DMT400053133	Potato	cytosol, plastid	50.34	49.92
Os02t0753500-01	Rice	cytosol	24.24	49.32
VIT_00s0304g00060.t01	Wine grape	plastid	55.89	46.56
Bra028602.1-P	Field mustard	cytosol	79.97	43.62
GSMUA_Achr11P...	Banana	plastid	42.59	43.25
HORVU4Hr1G024490.1	Barley	cytosol	22.9	42.5
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	40.74	42.23
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	41.58	42.22
KXG30730	Sorghum	cytosol, plastid	41.92	42.2
Zm00001d018088_P001	Maize	cytosol	41.92	42.2
TraesCS6A01G301400.1	Wheat	mitochondrion	39.23	39.23
GSMUA_Achr3P24690_001	Banana	cytosol	43.1	37.7
HORVU6Hr1G074660.5	Barley	plastid	39.56	37.66
AT1G78120.1	Thale cress	cytosol	33.0	36.98
AT2G42580.1	Thale cress	cytosol	33.84	29.09
AT3G58620.1	Thale cress	cytosol	31.99	27.86
AT1G53300.1	Thale cress	cytosol	30.13	25.61
AT3G14950.1	Thale cress	cytosol	29.8	24.25
AT4G30480.2	Thale cress	cytosol	7.58	16.25

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:830873	ProteinID:AED91492.1	ArrayExpress:AT5G10090	EnsemblPlantsGene:AT5G10090
RefSeq:AT5G10090	TAIR:AT5G10090	RefSeq:AT5G10090-TAIR-G	EnsemblPlants:AT5G10090.1	TAIR:AT5G10090.1	ProteinID:CAB92050.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	RefSeq:NP_196571.1	PFAM:PF07719	PFAM:PF13432	PO:PO:0001016	PO:PO:0001017
PO:PO:0007616	PO:PO:0009046	PO:PO:0025195	PO:PO:0025281	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR22904	PANTHER:PTHR22904:SF360	UniProt:Q9LX19	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	Symbol:TPR13	InterPro:TPR_2	InterPro:TPR_repeat	UniParc:UPI00000A6D41	SEG:seg

Description

TPR13Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LX19]

Coordinates

chr5:-:3153494..3156249

Molecular Weight (calculated)

65474.9 Da

IEP (calculated)

9.220

GRAVY (calculated)

-0.702

Length

594 amino acids

Sequence
(BLAST)

001: MADNPVEKKS RCRFLGFVFN RRGLWSKKCP ADNGSHKSTM SSSNASTATA TTANIQFTKS PCTEFNPRKL QENKVLPEPI EVQNQVQRPV SKPSSHQYPN
101: NNQLGSNGNN QPSNNNQGPV QQQQARKVPR EAIGLSGELE SMIIDNQKAK GNNGSMVRAS SSNVMLFGNL GNLKQPGPSG GNQTTIQNNG YGNTGGGYGV
201: KKTLEEERKT SVAQIPASNN QDQSGSLCRA ISTRMDPETL KIMGNEDYKN GNFAEALALY EAAISIDPKK ASYRSNKSAA LTALGRILEA VFECREAIRI
301: DPHYHRAHHR LANLYLRLGE VENSIYHFKH AGPEADQEDI SKAKMVQTHL NKCTEAKRLR DWNTLIKETE NTITTGADAA PQVYALQAEA FLKTYRHQEA
401: DDALSRCPVF DGEMSTKYYG SIGYAGFLVV WAQVHMASGR FVEAVEAIQR AGKLDGNNRE VSMVLRRAQA VTAARSRGND FFKAGRFQEA CTAYGEGLDH
501: DSRNSVLLCN RAACLSKMGQ FDRAVEDTSA ALAVRPGYTK ARLRRADCNA KLGNWESAVG DYEILRKETP EDEEVIKGLS EAQKQLVKRR GHDS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.