Factsheet for TraesCS6A01G301400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	86.53	89.7
HORVU6Hr1G074660.5	Barley	plastid	84.68	80.61
Os02t0753500-01	Rice	cytosol	39.56	80.48
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	67.34	68.38
KXG30730	Sorghum	cytosol, plastid	66.83	67.29
Zm00001d018088_P001	Maize	cytosol	64.81	65.25
CDY08814	Canola	cytosol, plastid	34.85	49.29
Bra006046.1-P	Field mustard	cytosol	35.19	46.86
CDX78366	Canola	cytosol	35.19	46.86
CDX81156	Canola	cytosol	34.85	46.41
GSMUA_Achr11P...	Banana	plastid	45.12	45.81
KRH15375	Soybean	cytosol	18.01	42.8
KRH59356	Soybean	plastid	30.13	41.72
KRH08675	Soybean	cytosol, mitochondrion, plastid	23.06	40.77
KRH43206	Soybean	cytosol, plastid	37.54	40.69
KRH31282	Soybean	plastid	39.73	40.55
KRG97591	Soybean	plastid	37.04	40.15
Bra024360.1-P	Field mustard	mitochondrion	39.39	39.93
CDY68462	Canola	cytosol	39.23	39.56
PGSC0003DMT400022057	Potato	plastid	28.96	39.36
CDX85779	Canola	cytosol	38.05	39.3
AT5G65160.1	Thale cress	cytosol	39.23	39.29
AT5G10090.1	Thale cress	cytosol	39.23	39.23
CDY40077	Canola	cytosol	37.88	39.13
Solyc04g055000.2.1	Tomato	cytosol	38.55	39.01
CDX69861	Canola	cytosol, mitochondrion	36.03	38.21
Bra009058.1-P	Field mustard	cytosol, mitochondrion	36.03	38.21
PGSC0003DMT400053133	Potato	cytosol, plastid	38.38	38.06
CDY21634	Canola	cytosol, mitochondrion	35.69	37.86
VIT_00s0304g00060.t01	Wine grape	plastid	42.93	35.76
CDX88420	Canola	cytosol	31.48	35.55
AT1G78120.1	Thale cress	cytosol	31.65	35.47
CDX87474	Canola	cytosol	30.98	34.98
Bra015628.1-P	Field mustard	cytosol	30.98	34.98
CDX68030	Canola	cytosol	29.46	34.38
Bra003657.1-P	Field mustard	cytosol	29.63	34.38
CDX79246	Canola	cytosol	29.29	33.98
Solyc04g073940.2.1	Tomato	cytosol	30.47	33.33
PGSC0003DMT400045666	Potato	cytosol	30.47	33.21
VIT_18s0001g05380.t01	Wine grape	plastid	38.22	32.11
KRH62368	Soybean	cytosol	33.5	30.43
KRH53085	Soybean	cytosol	33.33	28.37
KRH18895	Soybean	cytosol	33.33	28.16
TraesCS3A01G143000.1	Wheat	cytosol	31.48	27.83
KRH16702	Soybean	nucleus	32.15	27.52
TraesCS3A01G221800.1	Wheat	cytosol	30.47	26.31
TraesCS1A01G427400.1	Wheat	cytosol	30.64	26.11
Bra028602.1-P	Field mustard	cytosol	38.05	20.75
TraesCS5A01G336700.1	Wheat	cytosol	7.74	20.09

Protein Annotations

EnsemblPlants:TraesCS6A01G301400.1	EnsemblPlantsGene:TraesCS6A01G301400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
ncoils:Coil	PANTHER:PTHR22904	PANTHER:PTHR22904:SF360	PFAM:PF13176	PFAM:PF13432	PFscan:PS50005
PFscan:PS50293	SEG:seg	SMART:SM00028	SUPFAM:SSF48452	MapMan:35.1	:

Description

No Description!

Coordinates

chr6A:+:534940813..534944024

Molecular Weight (calculated)

63841.9 Da

IEP (calculated)

9.947

GRAVY (calculated)

-0.504

Length

594 amino acids

Sequence
(BLAST)

001: MLPTFLPQVR VRCRPRLRAG ANGHPSPPAL PWLDPHPSFP ARTTRRPNRR ATANFAVAMT ESRRADSDAA PPNPAQRKAG VRDDSSLVPR PKVMPLQPQI
101: NGAAAAQAQA QRPSGDKSKP TRAMNGGAKA AAASPAVEYT GMAAELDKMI QDHQRVKGTT QMMRATSGNM MMHRNLGNLN AGASARSSLD RSTKAAAAAA
201: SDRAKAGPGS NGYAFSGMGN IVGKPGEQLC RALSHRTDPE KLKEMGNEEY REGHYAEAVA LYDQAIIMDP TRPAYWSNKA AALAALGRLV EAVADCKEAV
301: RIDPSYGRAH HRLGGLYLRL GEPDKAINYL KQSPMDSVSA DVSRAQSVKG RIAKCGDARK VRDWITVLQE SQAAVSDGAD CSPQVMALQA EALLKLQRHD
401: EADSALRGAP RFGADESTKF FGTTAHAYVL MVRALVDMAA GRLEEAVATA QAACELDPGS REAASVHRRA KAVATARQRG NDLFKASRFA EACAAYGEGL
501: DKGEAGCAVL LCNRAACHAK LGRHEKAVED CSGALAVRPG YSKARLRRAD CNVKLERWEA SLRDYQVLIQ ELPENEDVKK ALAEVEAKLK SQRN

Best Arabidopsis Sequence Match ( AT5G65160.1 )
(BLAST)

001: MEENTAVAAA ERRSGCGLLS VMFGRRGLWS KKSTAVDNGS QKSTSTAATA TSNIQFTKSP GTELKKPRDD QKVSAEPIQN NKIQNNQNHN QRSVVPSKPS
101: SNQYPNNHQL GTYENHQRSS YNNNSNSVDP YRGGGGQRKV PREAIGLSGE LESMITDHQK AKGTNGLVRA SSSNIMLYGN LGNLNQTGPV TAGVNYGNNN
201: GYGVKRTTMG AATATTTKSQ DQSGSLCRAI STRMDPETLK IMGNEDYKNG NFAEALALYD AAIAIDPNKA AYRSNKSAAL TALGRILDAV FECREAIRIE
301: PHYHRAHHRL GNLYLRLGEV EKSIYHFKHS GPEADREDIA KAKTVQTHLN KCTEAKRLRD WNGLITETTN TISSGADAAP QVYALQAEAL LKTHRHQEAD
401: DALSRCPVFD IDASTRYYGP VGYAGFLVVR AQVHLASGRF DEAVEAIQRA GKLDGNNREV IMISRRAQAV TEARFKGNEL FKSGRFQEAC AAYGEGLDHD
501: PRNSVLLCNR AACRSKLGQF DKSIEDCTAA LSVRPGYGKA RLRRADCNAK IEKWELAVGD YEILKKESPE DEQVIRGLSE AQQQLMKRSG QDS

Arabidopsis Description

TPR14At5g65160 [Source:UniProtKB/TrEMBL;Acc:Q9FJQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.