CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08814	Canola	cytosol, plastid	69.95	98.1
AT5G65160.1	Thale cress	cytosol	88.12	87.52
CDX78366	Canola	cytosol	53.82	71.08
CDX69861	Canola	cytosol, mitochondrion	66.55	70.0
CDX81156	Canola	cytosol	52.97	69.96
CDY21634	Canola	cytosol, mitochondrion	65.87	69.29
CDY40077	Canola	cytosol	66.72	68.35
CDX85779	Canola	cytosol	66.72	68.35
KRH59356	Soybean	plastid	41.94	57.58
KRH43206	Soybean	cytosol, plastid	50.93	54.74
KRH31282	Soybean	plastid	53.31	53.95
KRG97591	Soybean	plastid	49.75	53.47
Solyc04g055000.2.1	Tomato	cytosol	49.92	50.09
PGSC0003DMT400053133	Potato	cytosol, plastid	50.59	49.75
Os02t0753500-01	Rice	cytosol	24.45	49.32
VIT_00s0304g00060.t01	Wine grape	plastid	56.88	46.98
HORVU4Hr1G024490.1	Barley	cytosol	24.45	45.0
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	41.09	42.23
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	41.94	42.22
GSMUA_Achr11P...	Banana	plastid	41.77	42.05
KXG30730	Sorghum	cytosol, plastid	42.11	42.03
Zm00001d018088_P001	Maize	cytosol	41.77	41.69
TraesCS6A01G301400.1	Wheat	mitochondrion	39.56	39.23
HORVU6Hr1G074660.5	Barley	plastid	40.75	38.46
CDX87474	Canola	cytosol	32.77	36.69
GSMUA_Achr3P24690_001	Banana	cytosol	41.94	36.38
CDX88420	Canola	cytosol	32.26	36.12
CDX68030	Canola	cytosol	29.88	34.58
CDX79246	Canola	cytosol	30.05	34.57
CDY25865	Canola	cytosol	31.41	28.12
CDY45930	Canola	cytosol	31.24	27.92
CDY34224	Canola	cytosol	3.23	27.54
CDY49237	Canola	cytosol	31.07	27.44
CDY51514	Canola	cytosol	30.9	27.2
CDY42827	Canola	cytosol	30.9	27.12
CDY61202	Canola	cytosol	30.9	27.12
CDY25722	Canola	cytosol, plastid	30.56	26.99
CDY55390	Canola	cytosol	30.56	26.91
CDX71941	Canola	cytosol	30.56	26.71
CDY02514	Canola	cytosol, plastid	29.88	26.27
CDY40820	Canola	mitochondrion	12.22	25.62
CDY34222	Canola	cytosol	12.9	24.68
CDX98517	Canola	cytosol	27.5	22.38
CDY34223	Canola	cytosol	12.22	22.09
CDX97619	Canola	cytosol	26.99	21.93
CDY32327	Canola	cytosol	26.99	21.81
CDY20095	Canola	nucleus	26.49	21.43
CDX72245	Canola	cytosol	8.32	18.63
CDY39682	Canola	cytosol	7.98	16.97
CDY65185	Canola	cytosol	7.81	16.61
CDX85780	Canola	nucleus	11.21	13.92
CDX68662	Canola	endoplasmic reticulum, mitochondrion	1.19	6.86
CDY28190	Canola	extracellular	1.19	6.86
CDY00576	Canola	cytosol	0.51	2.56

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078JSS3	EnsemblPlants:CDY68462	ProteinID:CDY68462	ProteinID:CDY68462.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00074261001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF07719	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF360
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2	InterPro:TPR_repeat
UniParc:UPI0004EF113B	SEG:seg	:	:	:	:

Description

BnaCnng59120DBnaCnng59120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JSS3]

Coordinates

chrLK037371:-:2957..5427

Molecular Weight (calculated)

64762.7 Da

IEP (calculated)

9.081

GRAVY (calculated)

-0.713

Length

589 amino acids

Sequence
(BLAST)

001: MGENAAERRS GCGLLSVMFG RRNLWSKKPT PTDNGSQKST STAATATSNI QFTKSPGSDL KKPHHDVKVS VETIQNNKIQ NQNQNQNQRS VVPSKPSSNQ
101: YPNNHQLGTY ENQRSSYNNN SSSVDPYRGG QRKVPREAIG LSGELESMIT DHQKSRGANG LVRASSSNVM LYGNLGNLNQ SGPATTLGYG NVNSGGGYGA
201: TRTNVAAPAT VTTKSQDQSG SLCRAISTRM DPETLKIMGN EDYKNGNFAE ALALYDAAIA IDPNKAAYRS NKSAALTALG RILDAVFECR EAIRIEPHYH
301: RAHHRLGNLY LRLGEVEKSM YHFKHSGPEA DPEDIVKAKA VQTHLNKCTE AKRLRDWNGL ITETTNTISS GADAAPQVYS LQAEALLKTH RHQEADDALS
401: KCPVFDVETS TRYYGPVGYA GFLVVRAQVH LASGRFDEAV EAIQRAGQLD GNNREVAMVS RRAQAVTEAR FRGNELFKAG RFEEACAAYG EGLDHDPRNS
501: VLLCNRAACR SKLGQFEKSV DDCTAAISVR PGYRKARLRR VDCNTKMRKW ELVAADYEIL EKDTPEDEEV IRGLSEAQQQ LMKRRGQDS

Best Arabidopsis Sequence Match ( AT5G65160.1 )
(BLAST)

001: MEENTAVAAA ERRSGCGLLS VMFGRRGLWS KKSTAVDNGS QKSTSTAATA TSNIQFTKSP GTELKKPRDD QKVSAEPIQN NKIQNNQNHN QRSVVPSKPS
101: SNQYPNNHQL GTYENHQRSS YNNNSNSVDP YRGGGGQRKV PREAIGLSGE LESMITDHQK AKGTNGLVRA SSSNIMLYGN LGNLNQTGPV TAGVNYGNNN
201: GYGVKRTTMG AATATTTKSQ DQSGSLCRAI STRMDPETLK IMGNEDYKNG NFAEALALYD AAIAIDPNKA AYRSNKSAAL TALGRILDAV FECREAIRIE
301: PHYHRAHHRL GNLYLRLGEV EKSIYHFKHS GPEADREDIA KAKTVQTHLN KCTEAKRLRD WNGLITETTN TISSGADAAP QVYALQAEAL LKTHRHQEAD
401: DALSRCPVFD IDASTRYYGP VGYAGFLVVR AQVHLASGRF DEAVEAIQRA GKLDGNNREV IMISRRAQAV TEARFKGNEL FKSGRFQEAC AAYGEGLDHD
501: PRNSVLLCNR AACRSKLGQF DKSIEDCTAA LSVRPGYGKA RLRRADCNAK IEKWELAVGD YEILKKESPE DEQVIRGLSE AQQQLMKRSG QDS

Arabidopsis Description

TPR14At5g65160 [Source:UniProtKB/TrEMBL;Acc:Q9FJQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.