Factsheet for HORVU4Hr1G024490.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08814	Canola	cytosol, plastid	45.31	34.52
KRH59356	Soybean	plastid	41.25	30.77
KRH15375	Soybean	cytosol	23.75	30.4
Bra006046.1-P	Field mustard	cytosol	41.25	29.6
CDX78366	Canola	cytosol	41.25	29.6
CDX81156	Canola	cytosol	40.94	29.37
PGSC0003DMT400022057	Potato	plastid	39.69	29.06
KRH31282	Soybean	plastid	48.44	26.63
KRH08675	Soybean	cytosol, mitochondrion, plastid	27.81	26.49
KRH43206	Soybean	cytosol, plastid	45.31	26.46
KRG97591	Soybean	plastid	45.0	26.28
HORVU6Hr1G074660.5	Barley	plastid	50.62	25.96
Bra003657.1-P	Field mustard	cytosol	40.0	25.0
CDX68030	Canola	cytosol	39.38	24.75
Bra024360.1-P	Field mustard	mitochondrion	45.31	24.74
GSMUA_Achr3P24690_001	Banana	cytosol	52.5	24.74
AT1G78120.1	Thale cress	cytosol	40.94	24.72
CDX79246	Canola	cytosol	39.38	24.61
CDX88420	Canola	cytosol	40.31	24.52
Bra015628.1-P	Field mustard	cytosol	40.31	24.52
CDY68462	Canola	cytosol	45.0	24.45
CDX87474	Canola	cytosol	40.0	24.33
AT5G65160.1	Thale cress	cytosol	44.69	24.11
Solyc04g055000.2.1	Tomato	cytosol	43.44	23.68
CDY21634	Canola	cytosol, mitochondrion	40.62	23.21
Solyc04g073940.2.1	Tomato	cytosol	39.38	23.2
PGSC0003DMT400045666	Potato	cytosol	39.38	23.12
CDX69861	Canola	cytosol, mitochondrion	40.31	23.04
Bra009058.1-P	Field mustard	cytosol, mitochondrion	40.31	23.04
CDY40077	Canola	cytosol	41.25	22.96
AT5G10090.1	Thale cress	cytosol	42.5	22.9
CDX85779	Canola	cytosol	40.94	22.78
PGSC0003DMT400053133	Potato	cytosol, plastid	42.19	22.54
KRH62368	Soybean	cytosol	45.0	22.02
VIT_00s0304g00060.t01	Wine grape	plastid	48.75	21.88
VIT_18s0001g05380.t01	Wine grape	plastid	46.56	21.07
KRH16702	Soybean	nucleus	44.69	20.61
KRH53085	Soybean	cytosol	44.69	20.49
HORVU3Hr1G027650.2	Barley	mitochondrion	41.88	20.12
KRH18895	Soybean	cytosol	43.44	19.77
HORVU1Hr1G093390.2	Barley	cytosol	41.56	19.76
HORVU3Hr1G054240.2	Barley	cytosol, mitochondrion	40.31	18.75
Bra028602.1-P	Field mustard	cytosol	40.94	12.03

Protein Annotations

EnsemblPlants:HORVU4Hr1G024490.1	EnsemblPlantsGene:HORVU4Hr1G024490	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
PANTHER:PTHR22904	PANTHER:PTHR22904:SF360	PFAM:PF13432	PFscan:PS50293	SEG:seg	SMART:SM00028
SUPFAM:SSF48452	UniParc:UPI000B47672E	UniProt:A0A287NKD8	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr4H:+:140175087..140176827

Molecular Weight (calculated)

34332.7 Da

IEP (calculated)

7.944

GRAVY (calculated)

-0.312

Length

320 amino acids

Sequence
(BLAST)

001: MAMGRLLDAV ADCREAIKVD PSFGRAHHRL GTLHLRTGHG DRAAKQYKLA THEASPEDMA RAHAVQALVA KCDDTRRRGS WQRLLRDAQA AVSAGADASP
101: KLACYQAEAL LSLQRPEEAD TVLCKNGGGG GTVEETERHL EIFGAGSCAY LLATRALVDT AMGRLEAAVA AADEAVRLSP SSSEAAGAAR QAQAVALARD
201: KGNALFKAVK LREACAAYEE GLREHPGNAT LLCNRAACRY KLGEWEAALR DCDAALAVRP SYGKARLRRA ACNDRLGRWE ASVLDYEALL HEAPGDEEVA
301: RALAHARTQL ISLNHRHATV

Best Arabidopsis Sequence Match ( AT1G53300.1 )
(BLAST)

001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG

Arabidopsis Description

TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.