Factsheet for Bra028602.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85779	Canola	cytosol	52.62	99.65
CDY40077	Canola	cytosol	51.88	98.26
Bra009058.1-P	Field mustard	cytosol, mitochondrion	42.79	83.21
Bra006046.1-P	Field mustard	cytosol	33.79	82.51
AT5G10090.1	Thale cress	cytosol	43.62	79.97
Bra024360.1-P	Field mustard	mitochondrion	36.0	66.89
KRH59356	Soybean	plastid	21.12	53.61
KRH43206	Soybean	cytosol, plastid	26.35	52.37
KRG97591	Soybean	plastid	25.9	51.46
KRH31282	Soybean	plastid	27.46	51.37
Os02t0753500-01	Rice	cytosol	12.95	48.29
Solyc04g055000.2.1	Tomato	cytosol	25.71	47.7
PGSC0003DMT400053133	Potato	cytosol, plastid	25.8	46.91
VIT_00s0304g00060.t01	Wine grape	plastid	28.56	43.62
Zm00001d018088_P001	Maize	cytosol	22.41	41.36
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	22.13	41.2
HORVU4Hr1G024490.1	Barley	cytosol	12.03	40.94
GSMUA_Achr11P...	Banana	plastid	21.95	40.85
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	21.4	40.66
KXG30730	Sorghum	cytosol, plastid	21.76	40.17
TraesCS6A01G301400.1	Wheat	mitochondrion	20.75	38.05
HORVU6Hr1G074660.5	Barley	plastid	21.03	36.7
Bra015628.1-P	Field mustard	cytosol	17.54	36.31
Bra003657.1-P	Field mustard	cytosol	16.99	36.13
GSMUA_Achr3P24690_001	Banana	cytosol	22.13	35.49
Bra000267.1-P	Field mustard	cytosol	17.54	28.42
Bra007405.1-P	Field mustard	cytosol	17.36	28.08
Bra004709.1-P	Field mustard	cytosol	16.71	27.7
Bra038116.1-P	Field mustard	cytosol	16.53	27.36
Bra030946.1-P	Field mustard	cytosol, plastid	16.25	26.42
Bra023794.1-P	Field mustard	cytosol, nucleus, plastid	6.98	23.31
Bra023793.1-P	Field mustard	cytosol	8.82	23.3
Bra027292.1-P	Field mustard	cytosol	14.6	21.66
Bra021583.1-P	Field mustard	nucleus	14.6	21.03
Bra023795.1-P	Field mustard	cytosol	1.56	19.32
Bra032136.1-P	Field mustard	cytosol	4.32	16.97
Bra011197.1-P	Field mustard	cytosol	0.28	3.66

Protein Annotations

Gene3D:1.25.40.10	Gene3D:1.25.40.90	MapMan:35.1	EnsemblPlantsGene:Bra028602	EnsemblPlants:Bra028602.1	EnsemblPlants:Bra028602.1-P
InterPro:CID_dom	ncoils:Coil	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR006569	InterPro:IPR008942	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M4EII7
PFAM:PF04818	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PFscan:PS51391	PANTHER:PTHR12460
PANTHER:PTHR12460:SF4	InterPro:RNA_pol_II-bd	SMART:SM00028	SMART:SM00582	SUPFAM:SSF48452	SUPFAM:SSF48464
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002543540	SEG:seg	:

Description

AT5G10090 (E=3e-249) | tetratricopeptide repeat (TPR)-containing protein

Coordinates

chrA02:+:1252915..1259098

Molecular Weight (calculated)

120719.0 Da

IEP (calculated)

9.693

GRAVY (calculated)

-0.695

Length

1089 amino acids

Sequence
(BLAST)

0001: MAEKPVEKRS RRGLLGAVFG KRGLWSKKCT ADKGNHKSTT STSIASTECT ANIQFTKSPA TELNPNKLQD HKVPPEPIQK PISKPSSNQN PNNHQLGNNG
0101: SHQHINNQWP VQQQAKKVPR ESIGLSGELE SMINDNQKAK GIRASSSNVM FGNLGNLKQP GTTSVGNQTT VQNKGYGNNT GGSYGVRNTM KEERQTAVST
0201: NQDQPGSLCR AISTRMDPET LKIMGNEDYR NGNFAEALAL YDAAIAIDPK KAAYRSNKSA ALTALGRIIE AVFECREAIR MEPHYHRAHH RLSNLYLRLG
0301: EVDNSIYHVK HSGPEADQED ILKAKTVQTH LNRCTEAKRL RDWRTLIKET ENTIASGADA APQVYALQAE AFLKSYRHQE ADDALSRCPV FDVEMSTKYY
0401: GPIGYAGFLV VWAQVHMSSG RFGEAVEAIQ RANKLDRNNR EVSMVLRRVQ AVTAARSKGN DFFKAGRFQE ASTAYGEGLD HDSRNSVLLC NRAACLSKMG
0501: QFHRAVEDST NALTVRPAYT KARLRRADCN AKLGNWEAAI GDYEILRKET PEDEEVLRAL SESKMQLVKR RFLRSHSAAQ SLQLRRLILS PISPAVTQFG
0601: NFSASPSPKS AQMSTVFSEE ILIDKLAKLN STQQSIETLS HWCIFNRVKA ELIVTTWEKQ FHSTEMAQKV PLLYLANDIL QNSKRQGNEF VQEFWNVLPK
0701: AVKDIVSQGD DRDKGVVSRL VKIWEDRKVF GSRSKNLRDV MLGEDCPLPL DVSKKRPRGS KSSKRDSKSS RTKVSSGGGV AEKISSAYHL VVAENSNEEA
0801: EMSKCKSAVK RIRKMEKDVE EACSTVKDNP KRKSLAKELE EEEYLLRQCV EKLKSVQGSR TSLVNQLKDA LREQESELEN LEAQIQVAQE QTEEAQKMQK
0901: RLKDEDYVSK PPTIAPGSVS ATETTDNNNS TKSGQTSKMT PASIAAMLTA STSSHMIMQS VLSSFAAEAT KTSGLSKPES TVPVSDSNAF VPSYNNPQNQ
1001: TPITQGQGQY HLISNPAAPQ QFLKQPVMNN PYGFGNIPLM PPGLPPPPPP PHMQQPQIPQ SNSAQQQQPQ QGSTFQPPGI MYYGAPHHS

Best Arabidopsis Sequence Match ( AT5G10090.1 )
(BLAST)

001: MADNPVEKKS RCRFLGFVFN RRGLWSKKCP ADNGSHKSTM SSSNASTATA TTANIQFTKS PCTEFNPRKL QENKVLPEPI EVQNQVQRPV SKPSSHQYPN
101: NNQLGSNGNN QPSNNNQGPV QQQQARKVPR EAIGLSGELE SMIIDNQKAK GNNGSMVRAS SSNVMLFGNL GNLKQPGPSG GNQTTIQNNG YGNTGGGYGV
201: KKTLEEERKT SVAQIPASNN QDQSGSLCRA ISTRMDPETL KIMGNEDYKN GNFAEALALY EAAISIDPKK ASYRSNKSAA LTALGRILEA VFECREAIRI
301: DPHYHRAHHR LANLYLRLGE VENSIYHFKH AGPEADQEDI SKAKMVQTHL NKCTEAKRLR DWNTLIKETE NTITTGADAA PQVYALQAEA FLKTYRHQEA
401: DDALSRCPVF DGEMSTKYYG SIGYAGFLVV WAQVHMASGR FVEAVEAIQR AGKLDGNNRE VSMVLRRAQA VTAARSRGND FFKAGRFQEA CTAYGEGLDH
501: DSRNSVLLCN RAACLSKMGQ FDRAVEDTSA ALAVRPGYTK ARLRRADCNA KLGNWESAVG DYEILRKETP EDEEVIKGLS EAQKQLVKRR GHDS

Arabidopsis Description

TPR13Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LX19]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.