Factsheet for Bra009058.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69861	Canola	cytosol, mitochondrion	99.82	99.82
Bra006046.1-P	Field mustard	cytosol	64.11	80.49
AT5G10090.1	Thale cress	cytosol	81.61	76.94
Bra024360.1-P	Field mustard	mitochondrion	70.18	67.06
KRH59356	Soybean	plastid	40.71	53.15
KRH43206	Soybean	cytosol, plastid	50.0	51.09
KRG97591	Soybean	plastid	50.0	51.09
KRH31282	Soybean	plastid	52.32	50.34
Solyc04g055000.2.1	Tomato	cytosol	49.82	47.53
PGSC0003DMT400053133	Potato	cytosol, plastid	49.46	46.24
Os02t0753500-01	Rice	cytosol	23.75	45.55
Bra028602.1-P	Field mustard	cytosol	83.21	42.79
VIT_00s0304g00060.t01	Wine grape	plastid	54.11	42.5
HORVU4Hr1G024490.1	Barley	cytosol	23.04	40.31
GSMUA_Achr11P...	Banana	plastid	41.61	39.83
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	40.54	38.8
Zm00001d018088_P001	Maize	cytosol	40.71	38.64
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	39.46	38.57
KXG30730	Sorghum	cytosol, plastid	40.18	38.14
TraesCS6A01G301400.1	Wheat	mitochondrion	38.21	36.03
Bra015628.1-P	Field mustard	cytosol	33.39	35.55
Bra003657.1-P	Field mustard	cytosol	32.5	35.55
HORVU6Hr1G074660.5	Barley	plastid	38.39	34.46
GSMUA_Achr3P24690_001	Banana	cytosol	40.89	33.73
Bra007405.1-P	Field mustard	cytosol	33.39	27.79
Bra000267.1-P	Field mustard	cytosol	32.68	27.23
Bra038116.1-P	Field mustard	cytosol	31.96	27.2
Bra030946.1-P	Field mustard	cytosol, plastid	31.43	26.27
Bra004709.1-P	Field mustard	cytosol	30.54	26.03
Bra023795.1-P	Field mustard	cytosol	3.75	23.86
Bra023793.1-P	Field mustard	cytosol	17.14	23.3
Bra023794.1-P	Field mustard	cytosol, nucleus, plastid	13.39	23.01
Bra027292.1-P	Field mustard	cytosol	29.11	22.21
Bra021583.1-P	Field mustard	nucleus	28.21	20.9
Bra032136.1-P	Field mustard	cytosol	8.39	16.97
Bra011197.1-P	Field mustard	cytosol	0.89	6.1

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ProteinID:AAZ67592	ProteinID:AAZ67592.1	EMBL:AC155344	EnsemblPlantsGene:Bra009058
EnsemblPlants:Bra009058.1	EnsemblPlants:Bra009058.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	PFAM:PF13181	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR22904	PANTHER:PTHR22904:SF360	UniProt:Q4ABR0	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000058C636	SEG:seg	:	:

Description

AT5G10090 (E=1e-212) | tetratricopeptide repeat (TPR)-containing protein

Coordinates

chrA10:+:15075145..15077074

Molecular Weight (calculated)

62415.2 Da

IEP (calculated)

9.827

GRAVY (calculated)

-0.647

Length

560 amino acids

Sequence
(BLAST)

001: MAENQAEKRS RRGLLGFVFG RRGLWSKKCT ADNGNKTPMR SSNASAPCTS NIQFTKSPGN ELNSKKLQEY KVSPEPIQNQ NQTQIQRPIS KPLSNQYPNN
101: NPGPVQQQAR KVVPRESIGL SGELESMITD NQKAKGMMFG NLGNLKQPGT TAVGNQTTVQ NSGYGRKTME GERQTPVRPI SVSNNQDQSG SLCRAISTRM
201: DPETLKIMGN EDYKNGNFVE ALALYDAAIA IDPKKAAYRS NKSAALTALG RILEAVFECR EAIRMEPHYH RAHHRLANLY LRLGEVENSI YHIKRSGPEA
301: DQEDILKAKT VQMHLNKCTE AKRLRDWNNL IKETKNTIAS GADAATQVYA LQAEAFLKSY RHQEADDALS RCPVFDVEMN TKYYGPIGYA GFLVVWAQVH
401: MSLGRFGEAV EAIQLAAKLD RNNREVSMVL RRVQAVTAAR SKGNDFFKTG RFQEASAAYG EGLDHDSRNS VLLCNRAACL FKMGQFDRAI GDSTAALSVR
501: PAYAKARLRR ADCNAKLGNW ELAVGDYEIL RKETPEDDQV IRGLMEAQNH LVKRRGHENL

Best Arabidopsis Sequence Match ( AT5G10090.1 )
(BLAST)

001: MADNPVEKKS RCRFLGFVFN RRGLWSKKCP ADNGSHKSTM SSSNASTATA TTANIQFTKS PCTEFNPRKL QENKVLPEPI EVQNQVQRPV SKPSSHQYPN
101: NNQLGSNGNN QPSNNNQGPV QQQQARKVPR EAIGLSGELE SMIIDNQKAK GNNGSMVRAS SSNVMLFGNL GNLKQPGPSG GNQTTIQNNG YGNTGGGYGV
201: KKTLEEERKT SVAQIPASNN QDQSGSLCRA ISTRMDPETL KIMGNEDYKN GNFAEALALY EAAISIDPKK ASYRSNKSAA LTALGRILEA VFECREAIRI
301: DPHYHRAHHR LANLYLRLGE VENSIYHFKH AGPEADQEDI SKAKMVQTHL NKCTEAKRLR DWNTLIKETE NTITTGADAA PQVYALQAEA FLKTYRHQEA
401: DDALSRCPVF DGEMSTKYYG SIGYAGFLVV WAQVHMASGR FVEAVEAIQR AGKLDGNNRE VSMVLRRAQA VTAARSRGND FFKAGRFQEA CTAYGEGLDH
501: DSRNSVLLCN RAACLSKMGQ FDRAVEDTSA ALAVRPGYTK ARLRRADCNA KLGNWESAVG DYEILRKETP EDEEVIKGLS EAQKQLVKRR GHDS

Arabidopsis Description

TPR13Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LX19]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.