Factsheet for VIT_00s0304g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08814	Canola	cytosol, plastid	38.71	65.71
KRH59356	Soybean	plastid	37.45	62.24
Bra006046.1-P	Field mustard	cytosol	37.73	60.31
CDX78366	Canola	cytosol	37.73	60.31
CDX81156	Canola	cytosol	37.73	60.31
Solyc04g055000.2.1	Tomato	cytosol	48.81	59.28
KRG97591	Soybean	plastid	45.16	58.76
KRH43206	Soybean	cytosol, plastid	44.88	58.39
PGSC0003DMT400053133	Potato	cytosol, plastid	48.11	57.26
KRH31282	Soybean	plastid	46.7	57.22
Bra024360.1-P	Field mustard	mitochondrion	46.98	57.17
CDY68462	Canola	cytosol	46.98	56.88
AT5G65160.1	Thale cress	cytosol	46.56	55.99
AT5G10090.1	Thale cress	cytosol	46.56	55.89
Os02t0753500-01	Rice	cytosol	22.72	55.48
CDX85779	Canola	cytosol	43.76	54.26
CDX69861	Canola	cytosol, mitochondrion	42.5	54.11
Bra009058.1-P	Field mustard	cytosol, mitochondrion	42.5	54.11
CDY40077	Canola	cytosol	43.62	54.09
VIT_18s0001g05380.t01	Wine grape	plastid	53.3	53.75
CDY21634	Canola	cytosol, mitochondrion	41.94	53.39
GSMUA_Achr3P24690_001	Banana	cytosol	48.67	51.1
HORVU4Hr1G024490.1	Barley	cytosol	21.88	48.75
GSMUA_Achr11P...	Banana	plastid	39.83	48.55
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	38.57	47.01
KXG30730	Sorghum	cytosol, plastid	38.85	46.95
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	37.73	46.95
Zm00001d018088_P001	Maize	cytosol	37.73	45.59
VIT_18s0001g09830.t01	Wine grape	cytosol	16.55	44.7
TraesCS6A01G301400.1	Wheat	mitochondrion	35.76	42.93
HORVU6Hr1G074660.5	Barley	plastid	37.17	42.47
VIT_08s0007g01480.t01	Wine grape	cytosol	23.0	40.9
VIT_19s0014g01470.t01	Wine grape	cytosol	37.59	38.67
VIT_12s0028g02240.t01	Wine grape	cytosol	36.47	36.62
Bra028602.1-P	Field mustard	cytosol	43.62	28.56
VIT_11s0037g01020.t01	Wine grape	cytosol	7.71	22.54

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100854530	wikigene:100854530	Gene3D:3.40.30.10	MapMan:35.1	ProteinID:CCB62871
ProteinID:CCB62871.1	UniProt:F6I7F3	EMBL:FN596780	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR013766	InterPro:IPR019734	EntrezGene:LOC100854530	wikigene:LOC100854530
PFAM:PF00085	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF360
SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF52833	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002109EB1	ArrayExpress:VIT_00s0304g00060	EnsemblPlantsGene:VIT_00s0304g00060	EnsemblPlants:VIT_00s0304g00060.t01
RefSeq:XP_003635218	RefSeq:XP_003635218.1	RefSeq:XP_003635218.2	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:+:22438120..22441039

Molecular Weight (calculated)

78495.7 Da

IEP (calculated)

9.104

GRAVY (calculated)

-0.550

Length

713 amino acids

Sequence
(BLAST)

001: MTEMVDTSPN KSSGCGLLNA VFGRRTFWLR RATSTGSLPS MNSINISRVS GTPSSKRRRG SSSDETSFLN QSNSSEAASG LGDKPIIRPS PSHTKTPPIY
101: NQNQGRRSDE AIMQPSLRSG AMKMSQREAY VNQGRRVPRE AIGISGELEA MIADHQSSKG NSSLVRASSS NVMLFSNLGN LRQPGTGNFT SNNVQDYLPK
201: AAREETSMPN GKYSSSQMGN VVKKPNGEKE PPSSLCRALS TRMDPETLKI MGNEDYKNGR FAEALALYDA AISIDPNKAS YRSNKSAALT ALGRLLEAVF
301: ECREALRIEP YYHRAHQRLG NLYLRLGEAE KAIYHFKHAG PESDPEDMAK AHSLQAHLSK CTEARRLRDW NTLVKEAGYT ISAGADSAPQ IYTLQAEALL
401: KLHRHQEADA VLAASPYFSV DDCTKFFGPY GNANLLMIRA QVDLAAGRLD DAFEAAQKAA RLDSNNKEVG IVVRRTRGVI SARAMGNDLF KASRFSEACI
501: AYGEGLDHDP FNSVLLCNRA TCRSKLGQFE KAVEDCTAAL SVRPSYSKAR LRRADCNAKL GRCEASIQDY EVLMRETPED EEVGKAMFEA QVQLKKQRGE
601: DVRDMKYTSG AKVVHISSHE RFKDFATSPG VSVALFCSGE GSKQVIQFME QLCKRYPSVN FLKVEVEEHP NIARSEGVSS LPAFKIYKNG SRVKEISGDN
701: LDLLESTVKS YNT

Best Arabidopsis Sequence Match ( AT5G65160.1 )
(BLAST)

001: MEENTAVAAA ERRSGCGLLS VMFGRRGLWS KKSTAVDNGS QKSTSTAATA TSNIQFTKSP GTELKKPRDD QKVSAEPIQN NKIQNNQNHN QRSVVPSKPS
101: SNQYPNNHQL GTYENHQRSS YNNNSNSVDP YRGGGGQRKV PREAIGLSGE LESMITDHQK AKGTNGLVRA SSSNIMLYGN LGNLNQTGPV TAGVNYGNNN
201: GYGVKRTTMG AATATTTKSQ DQSGSLCRAI STRMDPETLK IMGNEDYKNG NFAEALALYD AAIAIDPNKA AYRSNKSAAL TALGRILDAV FECREAIRIE
301: PHYHRAHHRL GNLYLRLGEV EKSIYHFKHS GPEADREDIA KAKTVQTHLN KCTEAKRLRD WNGLITETTN TISSGADAAP QVYALQAEAL LKTHRHQEAD
401: DALSRCPVFD IDASTRYYGP VGYAGFLVVR AQVHLASGRF DEAVEAIQRA GKLDGNNREV IMISRRAQAV TEARFKGNEL FKSGRFQEAC AAYGEGLDHD
501: PRNSVLLCNR AACRSKLGQF DKSIEDCTAA LSVRPGYGKA RLRRADCNAK IEKWELAVGD YEILKKESPE DEQVIRGLSE AQQQLMKRSG QDS

Arabidopsis Description

TPR14At5g65160 [Source:UniProtKB/TrEMBL;Acc:Q9FJQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.