CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40077	Canola	cytosol	98.61	98.61
CDX69861	Canola	cytosol, mitochondrion	81.39	83.57
CDY21634	Canola	cytosol, mitochondrion	80.87	83.04
CDX81156	Canola	cytosol	64.17	82.74
CDX78366	Canola	cytosol	64.0	82.51
AT5G10090.1	Thale cress	cytosol	82.78	80.13
CDY08814	Canola	cytosol, plastid	54.26	74.29
CDY68462	Canola	cytosol	68.35	66.72
KRH59356	Soybean	plastid	40.0	53.61
Bra028602.1-P	Field mustard	cytosol	99.65	52.62
KRH43206	Soybean	cytosol, plastid	50.09	52.55
KRG97591	Soybean	plastid	49.04	51.46
KRH31282	Soybean	plastid	52.0	51.37
Os02t0753500-01	Rice	cytosol	24.7	48.63
Solyc04g055000.2.1	Tomato	cytosol	48.7	47.7
PGSC0003DMT400053133	Potato	cytosol, plastid	48.87	46.91
VIT_00s0304g00060.t01	Wine grape	plastid	54.26	43.76
Zm00001d018088_P001	Maize	cytosol	42.61	41.53
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	42.09	41.37
GSMUA_Achr11P...	Banana	plastid	41.91	41.2
HORVU4Hr1G024490.1	Barley	cytosol	22.78	40.94
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	40.52	40.66
KXG30730	Sorghum	cytosol, plastid	41.39	40.34
TraesCS6A01G301400.1	Wheat	mitochondrion	39.3	38.05
HORVU6Hr1G074660.5	Barley	plastid	39.83	36.7
CDX87474	Canola	cytosol	33.22	36.31
CDX88420	Canola	cytosol	33.22	36.31
CDX68030	Canola	cytosol	31.65	35.76
GSMUA_Achr3P24690_001	Banana	cytosol	42.09	35.64
CDX79246	Canola	cytosol	31.3	35.16
CDY51514	Canola	cytosol	34.26	29.45
CDY42827	Canola	cytosol	33.57	28.76
CDY61202	Canola	cytosol	33.39	28.61
CDY49237	Canola	cytosol	33.04	28.49
CDY55390	Canola	cytosol	33.04	28.4
CDX71941	Canola	cytosol	32.87	28.04
CDY45930	Canola	cytosol	31.65	27.62
CDY25865	Canola	cytosol	31.48	27.51
CDY25722	Canola	cytosol, plastid	31.48	27.14
CDY02514	Canola	cytosol, plastid	31.13	26.72
CDY34224	Canola	cytosol	3.13	26.09
CDY40820	Canola	mitochondrion	12.35	25.27
CDY34222	Canola	cytosol	13.22	24.68
CDY34223	Canola	cytosol	13.22	23.31
CDX98517	Canola	cytosol	28.17	22.38
CDY32327	Canola	cytosol	27.83	21.95
CDX97619	Canola	cytosol	27.65	21.93
CDY20095	Canola	nucleus	27.3	21.57
CDY39682	Canola	cytosol	8.52	17.69
CDX72245	Canola	cytosol	8.0	17.49
CDY65185	Canola	cytosol	8.17	16.97
CDX85780	Canola	nucleus	11.13	13.5
CDY28190	Canola	extracellular	1.39	7.84
CDX68662	Canola	endoplasmic reticulum, mitochondrion	1.39	7.84
CDY00576	Canola	cytosol	0.7	3.42

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX85779	ProteinID:CDX85779	ProteinID:CDX85779.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00143538001	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF360	SMART:SM00028
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000058C61B	SEG:seg

Description

BnaA02g00340D

Coordinates

chrLK031842:+:1646872..1649225

Molecular Weight (calculated)

63855.3 Da

IEP (calculated)

9.771

GRAVY (calculated)

-0.733

Length

575 amino acids

Sequence
(BLAST)

001: MAEKPVEKRS RRGLLGAVFG KRGLWSKKCT ADKGNHKSTT STSIASTECT ANIQFTKSPA TELNPNKLQD HKVPPEPIQK PISKPSSNQN PNNHQLGNNG
101: SHQHINNQWP VQQQAKKVPR ESIGLSGELE SMINDNQKAK GIRASSSNVM FGNLGNLKQP GTTSVGNQTT VQNKGYGNNT GGSYGVRNTM KEERQTAVST
201: NQDQPGSLCR AISTRMDPET LKIMGNEDYR NGNFAEALAL YDAAIAIDPK KAAYRSNKSA ALTALGRIIE AVFECREAIR MEPHYHRAHH RLSNLYLRLG
301: EVDNSIYHVK HSGPEADQED ILKAKTVQTH LNRCTEAKRL RDWRTLIKET ENTIASGADA APQVYALQAE AFLKSYRHQE ADDALSRCPV FDVEMSTKYY
401: GPIGYAGFLV VWAQVHMSSG RFGEAVEAIQ RANKLDRNNR EVSMVLRRVQ AVTAARSKGN DFFKAGRFQE ASTAYGEGLD HDSRNSVLLC NRAACLSKMG
501: QFHRAVEDST NALTVRPAYT KARLRRADCN AKLGNWEAAI GDYEILRKET PEDEEVLRAL SESKMQLVKR RGHES

Best Arabidopsis Sequence Match ( AT5G10090.1 )
(BLAST)

001: MADNPVEKKS RCRFLGFVFN RRGLWSKKCP ADNGSHKSTM SSSNASTATA TTANIQFTKS PCTEFNPRKL QENKVLPEPI EVQNQVQRPV SKPSSHQYPN
101: NNQLGSNGNN QPSNNNQGPV QQQQARKVPR EAIGLSGELE SMIIDNQKAK GNNGSMVRAS SSNVMLFGNL GNLKQPGPSG GNQTTIQNNG YGNTGGGYGV
201: KKTLEEERKT SVAQIPASNN QDQSGSLCRA ISTRMDPETL KIMGNEDYKN GNFAEALALY EAAISIDPKK ASYRSNKSAA LTALGRILEA VFECREAIRI
301: DPHYHRAHHR LANLYLRLGE VENSIYHFKH AGPEADQEDI SKAKMVQTHL NKCTEAKRLR DWNTLIKETE NTITTGADAA PQVYALQAEA FLKTYRHQEA
401: DDALSRCPVF DGEMSTKYYG SIGYAGFLVV WAQVHMASGR FVEAVEAIQR AGKLDGNNRE VSMVLRRAQA VTAARSRGND FFKAGRFQEA CTAYGEGLDH
501: DSRNSVLLCN RAACLSKMGQ FDRAVEDTSA ALAVRPGYTK ARLRRADCNA KLGNWESAVG DYEILRKETP EDEEVIKGLS EAQKQLVKRR GHDS

Arabidopsis Description

TPR13Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LX19]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.