CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49237	Canola	cytosol	94.66	95.65
AT3G58620.1	Thale cress	cytosol	84.27	83.28
CDY55390	Canola	cytosol	72.85	73.39
CDY61202	Canola	cytosol	73.0	73.32
CDY51514	Canola	cytosol	71.66	72.2
CDY42827	Canola	cytosol	71.81	72.13
VIT_18s0001g09830.t01	Wine grape	cytosol	22.26	56.82
KRH22291	Soybean	plastid	48.81	56.34
VIT_12s0028g02240.t01	Wine grape	cytosol	59.05	56.06
GSMUA_Achr10P...	Banana	cytosol	51.04	51.57
GSMUA_Achr7P24480_001	Banana	cytosol	48.07	49.92
CDY25865	Canola	cytosol	48.66	49.85
CDY45930	Canola	cytosol	48.66	49.77
CDY00576	Canola	cytosol	8.61	49.57
CDY25722	Canola	cytosol, plastid	48.52	49.03
GSMUA_Achr4P08560_001	Banana	cytosol	49.7	48.91
Os01t0218200-00	Rice	plastid	48.37	48.51
CDY02514	Canola	cytosol, plastid	48.07	48.36
KRH27037	Soybean	nucleus	48.37	48.3
Zm00001d039362_P002	Maize	cytosol	47.77	48.06
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	35.76	47.91
EES02247	Sorghum	plastid	48.52	47.81
TraesCS3B01G162100.1	Wheat	cytosol	47.63	47.77
TraesCS3D01G144600.1	Wheat	cytosol	47.33	47.26
Zm00001d008930_P003	Maize	cytosol	47.18	47.11
EES01073	Sorghum	cytosol	47.48	46.99
Os05t0210600-01	Rice	cytosol	27.89	46.88
Zm00001d004494_P001	Maize	cytosol, mitochondrion	15.43	46.85
TraesCS3A01G143000.1	Wheat	cytosol	46.59	46.73
Zm00001d044479_P001	Maize	cytosol	46.88	46.4
GSMUA_Achr3P25160_001	Banana	cytosol	48.96	46.35
HORVU1Hr1G093390.2	Barley	cytosol	45.99	46.06
Zm00001d011352_P001	Maize	cytosol	45.85	45.37
TraesCS3B01G251600.1	Wheat	cytosol, mitochondrion	46.29	45.35
TraesCS3A01G221800.1	Wheat	cytosol	46.29	45.35
TraesCS3D01G231300.1	Wheat	cytosol, mitochondrion	46.29	45.35
TraesCS1B01G462300.1	Wheat	cytosol	46.29	44.96
TraesCS1A01G427400.1	Wheat	cytosol	46.29	44.76
HORVU3Hr1G027650.2	Barley	mitochondrion	44.21	44.74
OQU78515	Sorghum	cytosol	46.44	44.71
TraesCS1D01G437100.1	Wheat	nucleus	46.29	44.7
HORVU3Hr1G054240.2	Barley	cytosol, mitochondrion	45.25	44.33
Os05t0587300-01	Rice	cytosol	36.2	43.96
GSMUA_AchrUn_...	Banana	cytosol	16.47	41.42
CDY08814	Canola	cytosol, plastid	25.07	40.24
CDX78366	Canola	cytosol	25.96	39.24
CDX81156	Canola	cytosol	25.82	39.01
CDY20095	Canola	nucleus	40.21	37.23
CDY32327	Canola	cytosol	40.21	37.17
CDX97619	Canola	cytosol	39.76	36.97
CDX98517	Canola	cytosol	39.47	36.74
CDY40820	Canola	mitochondrion	14.1	33.81
CDY34222	Canola	cytosol	15.28	33.44
CDX69861	Canola	cytosol, mitochondrion	27.6	33.21
CDY21634	Canola	cytosol, mitochondrion	27.45	33.04
CDY40077	Canola	cytosol	28.04	32.87
CDX85779	Canola	cytosol	28.04	32.87
CDX79246	Canola	cytosol	24.48	32.23
CDX88420	Canola	cytosol	25.07	32.13
CDX87474	Canola	cytosol	24.93	31.94
CDY34223	Canola	cytosol	15.43	31.9
CDX68030	Canola	cytosol	23.89	31.63
CDY68462	Canola	cytosol	26.71	30.56
CDY34224	Canola	cytosol	2.97	28.99
Zm00001d009724_P009	Maize	cytosol	43.18	27.22
CDY39682	Canola	cytosol	9.94	24.19
CDY65185	Canola	cytosol	9.35	22.74
CDX72245	Canola	cytosol	8.46	21.67
CDY28190	Canola	extracellular	2.67	17.65
CDX68662	Canola	endoplasmic reticulum, mitochondrion	2.67	17.65
CDX85780	Canola	nucleus	10.68	15.19
Zm00001d006366_P001	Maize	cytosol	0.3	0.86
Zm00001d033961_P001	Maize	cytosol	0.3	0.86

Protein Annotations

Gene3D:1.25.40.10	MapMan:11.3.2.5	Gene3D:3.40.30.10	GO:A0A078C4L1	EnsemblPlants:CDX71941	ProteinID:CDX71941
ProteinID:CDX71941.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00155698001	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR013766	InterPro:IPR019734	PFAM:PF00085	PFAM:PF13174	PFAM:PF13432
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF374	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF52833	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI0004EE15B5	SEG:seg	:	:	:	:

Description

BnaC08g29330D

Coordinates

chrLK031795:-:1401664..1404301

Molecular Weight (calculated)

73955.3 Da

IEP (calculated)

9.122

GRAVY (calculated)

-0.526

Length

674 amino acids

Sequence
(BLAST)

001: MSHYRRHSLE PSIDSITNRF RDSLNFQRDD DDVINKPDFR ELDYPLKPRV SSSTAATPAA SGSSSSSSGS ASGKPSVTSQ LAKRSHSGEL TESGSATPGS
101: GAKNRNPKPG HRRSASAGTP LIYSGLAFSP VKNRGGASGA TSPSPGVVPS GNICPSGKIP KTGMASRASV KPETLFTGNG NYGHGNIVRG GGGKSKPETR
201: DPEEVKKAGN DMYRKGNFSE ALSLYDKAIS MSPENPAYRS NRAAALAASG RLKEAVKECL EAVRLDPSYA RAHQRLASLY LRLGEAENAR RHLCFSGQCP
301: DQTELQRVQT LEKHLRLCSE ARKIGDWKKV VTEIDAAIAN GADSSPQLVA CKAEALLRLH QIKDSDLCLS TIQRLDHHHH HHHHTQAKLF GMLCDAYVLC
401: VQAQVDMALG RFENALVKAE RAMKIDHSSN NPEVVSVLNN VTNVAKARTR GNELFTSGRY SEASVAYGEG LKFDAFNSVL YCNRAACWFK LGVWDQSVDD
501: CNQALRIQPD YTKALLRRAA SYGKLGRWDD AVRDYEVLRK ELPGDSEVAE SLQRALLNKS EEHKYLGYNN EVEEVSSLDK FKTATSLPGI SVFYFKSSSN
601: RQSEAISPFI NTLCLRYPLV HFFMVDVDES LALAKAESIK KVPTFKIYKE GEKAKDMVCP SHKLLEDNVK HFLL

Best Arabidopsis Sequence Match ( AT3G58620.1 )
(BLAST)

001: MSHYRRHSLE PSITSKFRDS LSFQRDDDVI NKPDFRELDF GSPLRPRGSS SAAATPAASG SSSSSSGSAS GKPAVTSQFA RRSHSGELSG LSQTSPVKPG
101: SVNRNLKPGH RRSASAGTPL IYSGLGFSPV NNNNNSSRGG GSGATSPNPG VLPTGNICPS GRILKTGMAT RASVRPETLC TGTANYGHGN IIRTGGKVSH
201: ATKAAAEMSD SEEVKKAGNV MYRKGNYAEA LALYDRAISL SPENPAYRSN RAAALAASGR LEEAVKECLE AVRCDPSYAR AHQRLASLYL RLGEAENARR
301: HLCVSGQCPD QADLQRLQTL EKHLRLCTEA RKIGDWRTVI SEIDAAIANG ADSSPQLVAC KAEAFLRLHQ IKDSDLCISS IPRLDHHHTQ PPEKLFGIVC
401: DAYVLCVQAQ VDMALGRFEN AIVKVERAMT IDHSNSPEVV SVLNNVKNVA KARTRGNELF SSGRYSEASV AYGDGLKLDA FNSVLYCNRA ACWFKLGMWE
501: KSVDDCNQAL RIQPSYTKAL LRRAASYGKL GRWEDAVRDY EVLRKELPGD SEVAESLQRA RNALSNKSEE PKYLGFNNEV EEVSTLDKFK TATSLPGISV
601: FHFKSSSNRQ SEAISPFVNT LCLRYPLVHF FKVDVEESLA LAKAESIKKI PTFKIYKKGE KVKEMVCPSH QLLEDSVTHF LL

Arabidopsis Description

TTL4TTL4 [Source:UniProtKB/TrEMBL;Acc:A0A178VKQ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.