CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98517	Canola	cytosol	97.79	97.93
Bra027292.1-P	Field mustard	cytosol	99.03	97.82
CDY32327	Canola	cytosol	76.14	75.72
CDY20095	Canola	nucleus	76.0	75.69
AT3G14950.1	Thale cress	cytosol	68.97	68.49
CDY25865	Canola	cytosol	50.48	55.62
CDY45930	Canola	cytosol	50.21	55.24
CDY02514	Canola	cytosol, plastid	50.9	55.07
CDY34224	Canola	cytosol	5.24	55.07
CDY25722	Canola	cytosol, plastid	50.34	54.72
CDY34222	Canola	cytosol	21.38	50.32
KRH21985	Soybean	cytosol	47.17	49.42
CDY40820	Canola	mitochondrion	19.03	49.11
VIT_19s0014g01470.t01	Wine grape	cytosol	46.9	49.06
KRH27330	Soybean	cytosol	47.03	48.85
KRH26223	Soybean	nucleus	45.24	48.52
KRH55099	Soybean	nucleus	44.97	48.08
PGSC0003DMT400054803	Potato	cytosol	19.31	47.62
GSMUA_Achr10P...	Banana	cytosol	42.9	46.63
Solyc07g062580.2.1	Tomato	cytosol	43.86	45.36
PGSC0003DMT400032362	Potato	cytosol	43.59	45.14
GSMUA_Achr7P24480_001	Banana	cytosol	39.31	43.91
CDY34223	Canola	cytosol	19.59	43.56
GSMUA_Achr4P08560_001	Banana	cytosol	40.69	43.07
GSMUA_Achr3P25160_001	Banana	cytosol	42.21	42.98
Zm00001d008930_P003	Maize	cytosol	39.86	42.81
TraesCS3B01G162100.1	Wheat	cytosol	39.45	42.56
Os01t0218200-00	Rice	plastid	39.45	42.56
PGSC0003DMT400054904	Potato	cytosol	35.17	42.22
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	29.24	42.15
TraesCS3A01G143000.1	Wheat	cytosol	39.03	42.11
Zm00001d044479_P001	Maize	cytosol	39.45	42.0
TraesCS3D01G144600.1	Wheat	cytosol	39.03	41.93
EES01073	Sorghum	cytosol	39.31	41.85
EES02247	Sorghum	plastid	39.45	41.81
Zm00001d039362_P002	Maize	cytosol	38.62	41.79
Os05t0210600-01	Rice	cytosol	23.03	41.65
HORVU3Hr1G027650.2	Barley	mitochondrion	37.93	41.29
CDY42827	Canola	cytosol	38.21	41.28
Solyc10g007240.1.1	Tomato	cytosol	33.79	41.25
PGSC0003DMT400054902	Potato	cytosol	16.97	41.14
CDY61202	Canola	cytosol	38.07	41.13
TraesCS3D01G231300.1	Wheat	cytosol, mitochondrion	38.62	40.7
Zm00001d011352_P001	Maize	cytosol	38.21	40.68
CDY51514	Canola	cytosol	37.52	40.66
HORVU1Hr1G093390.2	Barley	cytosol	37.66	40.56
TraesCS3B01G251600.1	Wheat	cytosol, mitochondrion	38.48	40.55
HORVU3Hr1G054240.2	Barley	cytosol, mitochondrion	38.48	40.55
TraesCS1A01G427400.1	Wheat	cytosol	38.9	40.46
TraesCS3A01G221800.1	Wheat	cytosol	38.34	40.41
TraesCS1D01G437100.1	Wheat	nucleus	38.9	40.4
CDY55390	Canola	cytosol	37.24	40.36
TraesCS1B01G462300.1	Wheat	cytosol	38.62	40.35
Solyc10g007230.1.1	Tomato	cytosol	33.1	40.27
PGSC0003DMT400054796	Potato	cytosol, plastid	34.07	40.16
CDY49237	Canola	cytosol	36.83	40.03
CDX71941	Canola	cytosol	36.97	39.76
OQU78515	Sorghum	cytosol	38.34	39.71
Zm00001d004494_P001	Maize	cytosol, mitochondrion	12.14	39.64
PGSC0003DMT400054911	Potato	cytosol	27.86	38.77
PGSC0003DMT400054909	Potato	cytosol	21.79	38.35
Solyc10g007220.1.1	Tomato	cytosol	25.52	36.63
Os05t0587300-01	Rice	cytosol	28.0	36.58
Solyc10g007420.2.1	Tomato	cytosol	21.38	36.47
CDY08814	Canola	cytosol, plastid	20.69	35.71
GSMUA_AchrUn_...	Banana	cytosol	12.97	35.07
Solyc10g007250.1.1	Tomato	cytosol	13.38	34.77
Solyc10g007430.1.1	Tomato	cytosol, plastid	18.07	34.66
PGSC0003DMT400091014	Potato	nucleus	28.97	34.6
CDX78366	Canola	cytosol	20.41	33.18
CDX81156	Canola	cytosol	19.72	32.06
CDX87474	Canola	cytosol	23.17	31.94
CDX79246	Canola	cytosol	22.48	31.84
CDX88420	Canola	cytosol	23.03	31.75
CDY00576	Canola	cytosol	5.1	31.62
CDX68030	Canola	cytosol	22.07	31.43
CDX69861	Canola	cytosol, mitochondrion	22.07	28.57
CDY21634	Canola	cytosol, mitochondrion	21.93	28.39
CDY40077	Canola	cytosol	22.07	27.83
CDX85779	Canola	cytosol	21.93	27.65
CDY68462	Canola	cytosol	21.93	26.99
Zm00001d009724_P009	Maize	cytosol	37.93	25.73
CDY39682	Canola	cytosol	7.17	18.77
CDY65185	Canola	cytosol	6.9	18.05
CDX72245	Canola	cytosol	6.21	17.11
CDX85780	Canola	nucleus	8.0	12.24
CDX68662	Canola	endoplasmic reticulum, mitochondrion	1.1	7.84
CDY28190	Canola	extracellular	0.97	6.86
Zm00001d006366_P001	Maize	cytosol	0.55	1.72
Zm00001d033961_P001	Maize	cytosol	0.55	1.72

Protein Annotations

Gene3D:1.25.40.10	MapMan:11.3.2.5	Gene3D:3.40.30.10	GO:A0A078EA71	EnsemblPlants:CDX97619	ProteinID:CDX97619
ProteinID:CDX97619.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00104839001
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR013766	InterPro:IPR019734	PFAM:PF00085	PFAM:PF13181
PFAM:PF13414	PFAM:PF13431	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF402
SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF52833	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0004EF23DA	SEG:seg	:	:

Description

BnaA05g24600D

Coordinates

chrLK031900:-:639301..642185

Molecular Weight (calculated)

78895.7 Da

IEP (calculated)

9.464

GRAVY (calculated)

-0.386

Length

725 amino acids

Sequence
(BLAST)

001: MLKPIKHVSE PDTVADKLRR SLNMTNNKPD NVHVEFGSPI TPLQTQPSGL TSAATTTSNS SFSSSSSGSV SGRAVHTPAS TKSDSGRSNP SAVQSSRATA
101: PSASQTSKTS NPSAAKSSKS TASGSSNPAG AKTGSNPRPG RVSSASDSAS GSTKRSSKSS TPPPQPVKIL PGGNLFPSGK VHITGMTQGV PKRMILGPGS
201: KSYGYGSVMR GTNSYSSTPA KLTTSSGSSS SGALVISRCS SGGGGSEVDT SWKRVMNSPN PEEVKRLGNE MFKKGCFSEA LKFYDRALEL SPSNATYRSN
301: RAAALSGLGR IAEAVIECEH AIKLDPNFAR AHHRLATLLL RLGQVDNAGK HFFSVEEPSD PMVVKVLEEV DRHLNKCAEA RRRGEWNIVL TEVSAAMESG
401: ADMSPQLAMC KVEALMKLLR LDEAQTILAS APKIEILLPS SFTRIRFFDM ISEAYTYFVK SQMELALGRF ENAVTFVEKA SEMEPRNSEI ETLNRNVKMI
501: VRTRDRGNGL YNSERYTEAS AAYAEGLKFD PYNATLFSHR ADCFFKVGMW ESSIEDCSHA LLILPSCTKA RRQRAASYSK LERWAEAVSD YETLRKELSY
601: DREIAESLFH AQVALKKSRG EVVLNMEFGG EVEEVFSLEE LKAALTRPAF DQQCKEISIF MNALCIRYPS LHFLKVEIEK CPGVGDAEKV RVVPTFKIYK
701: VGIRMKEIVC PSKEALEISV RHYGL

Best Arabidopsis Sequence Match ( AT3G14950.1 )
(BLAST)

001: MSKLKKPILE SNCVADKLCD SLNMEDNNND KPDTINVDLG SPITPLQTQP SGLSSSTSSF SSSSSGSVTG HAGHTPPVTR KPDSVQPVPS ASKSKSSNLS
101: SAAKSSKSST TPSSAAQFGG SYSPARAQSR ASSQVGAKTG NIIRPSSNSA SVTTKPSGNK SSVSSKQSLK ILPAGNLVPS GKVQITGMTQ EKPRSMVLGP
201: GAKSYGYGSI IRGNNLSPVK PTMMSDSSSV LPLTLSNNST GGPDAYTSWK IAIYGSNPEE VKRFGNEMFR KGCFAEALKL YDRAIELSPS NATYHSNRAA
301: ALSSLGQIGE AVNECEIAIK LDPNFARAHH RLASLLLRLG YVDNAGIHLY SVEEPLDPTV VKMLQQVDKH LNKCTYARRR GEWSIVLTEV SAAIASGADS
401: SPQLAMCKAE ALLKLLRLDD AQRVLECVPK VEPFPASFSH TRFFDMIAEA YTSFVKSQME LALGRFENAV VTAEKASKID PQNNEVEILY KNVRLITRAR
501: DRGNDLYELE RYTEARSAYA EGLKYDPSNA TLLCYRADCF FKVGMWESSI EDCNHALLIL PSYTKPRLQR AALYTKLERW AEAVSDYEIL RKELPYDKEI
601: AESLFHAQVA LKKSRGEVVL NMEFGGEVEE ISSLEELKAA LTRPGVSVVH FFRASDPQCK EISTFVDALC VRYPSLHFLK VEIVKCPEVG NAERVRVVPT
701: FKIYKLGIRM KEIVCPSKEA LEKTVRHYGL

Arabidopsis Description

TTL2TPR repeat-containing thioredoxin TTL2 [Source:UniProtKB/Swiss-Prot;Acc:F4IXE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.