Factsheet for PGSC0003DMT400091014

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054803	Potato	cytosol	31.14	64.29
PGSC0003DMT400054911	Potato	cytosol	53.21	62.0
PGSC0003DMT400054902	Potato	cytosol	29.16	59.2
PGSC0003DMT400054796	Potato	cytosol, plastid	54.86	54.15
Solyc10g007430.1.1	Tomato	cytosol, plastid	32.45	52.12
PGSC0003DMT400054909	Potato	cytosol	35.09	51.7
PGSC0003DMT400054904	Potato	cytosol	50.08	50.33
PGSC0003DMT400032362	Potato	cytosol	46.62	40.43
Os05t0210600-01	Rice	cytosol	25.86	39.15
CDY34224	Canola	cytosol	4.45	39.13
VIT_19s0014g01470.t01	Wine grape	cytosol	42.67	37.37
KRH55099	Soybean	nucleus	41.68	37.32
Bra038116.1-P	Field mustard	cytosol	40.2	37.08
KRH21985	Soybean	cytosol	42.17	36.99
CDY25865	Canola	cytosol	40.03	36.93
CDY45930	Canola	cytosol	39.87	36.72
KRH26223	Soybean	nucleus	40.69	36.54
KRH27330	Soybean	cytosol	41.85	36.39
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	29.98	36.18
Bra030946.1-P	Field mustard	cytosol, plastid	39.87	36.12
CDY02514	Canola	cytosol, plastid	39.87	36.12
CDY25722	Canola	cytosol, plastid	39.21	35.68
Zm00001d004494_P001	Maize	cytosol, mitochondrion	13.01	35.59
GSMUA_Achr7P24480_001	Banana	cytosol	37.89	35.44
GSMUA_Achr10P...	Banana	cytosol	38.88	35.38
Bra023795.1-P	Field mustard	cytosol	5.11	35.23
AT1G53300.1	Thale cress	cytosol	40.2	34.91
GSMUA_Achr4P08560_001	Banana	cytosol	38.55	34.16
TraesCS3B01G162100.1	Wheat	cytosol	37.56	33.93
CDY40820	Canola	mitochondrion	15.65	33.81
TraesCS3D01G144600.1	Wheat	cytosol	37.07	33.33
HORVU3Hr1G027650.2	Barley	mitochondrion	36.57	33.33
TraesCS3A01G143000.1	Wheat	cytosol	36.9	33.33
Zm00001d008930_P003	Maize	cytosol	36.9	33.19
Zm00001d039362_P002	Maize	cytosol	36.57	33.13
Os01t0218200-00	Rice	plastid	36.57	33.04
EES01073	Sorghum	cytosol	36.41	32.45
EES02247	Sorghum	plastid	36.24	32.16
CDY34222	Canola	cytosol	16.31	32.14
Zm00001d044479_P001	Maize	cytosol	35.91	32.01
Zm00001d011352_P001	Maize	cytosol	35.91	32.01
HORVU1Hr1G093390.2	Barley	cytosol	35.42	31.95
TraesCS1A01G427400.1	Wheat	cytosol	36.57	31.85
TraesCS1B01G462300.1	Wheat	cytosol	36.41	31.84
TraesCS1D01G437100.1	Wheat	nucleus	36.41	31.66
GSMUA_Achr3P25160_001	Banana	cytosol	36.9	31.46
TraesCS3D01G231300.1	Wheat	cytosol, mitochondrion	34.93	30.81
TraesCS3B01G251600.1	Wheat	cytosol, mitochondrion	34.93	30.81
AT3G14950.1	Thale cress	cytosol	36.9	30.68
TraesCS3A01G221800.1	Wheat	cytosol	34.76	30.67
HORVU3Hr1G054240.2	Barley	cytosol, mitochondrion	34.6	30.52
OQU78515	Sorghum	cytosol	35.09	30.43
CDY20095	Canola	nucleus	36.41	30.36
CDY32327	Canola	cytosol	36.24	30.18
PGSC0003DMT400022057	Potato	plastid	21.58	29.98
Os05t0587300-01	Rice	cytosol	27.02	29.55
Bra021583.1-P	Field mustard	nucleus	36.74	29.5
Bra027292.1-P	Field mustard	cytosol	35.42	29.29
CDX98517	Canola	cytosol	34.93	29.28
CDX97619	Canola	cytosol	34.6	28.97
CDY34223	Canola	cytosol	15.16	28.22
Bra023793.1-P	Field mustard	cytosol	18.95	27.91
Bra023794.1-P	Field mustard	cytosol, nucleus, plastid	14.5	26.99
PGSC0003DMT400045666	Potato	cytosol	22.73	25.32
PGSC0003DMT400053133	Potato	cytosol, plastid	23.23	23.54
GSMUA_AchrUn_...	Banana	cytosol	9.88	22.39
Zm00001d009724_P009	Maize	cytosol	33.77	19.18
PGSC0003DMT400029173	Potato	cytosol	9.06	18.77
Zm00001d006366_P001	Maize	cytosol	0.0	0.0
Zm00001d033961_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR013766	InterPro:IPR019734	UniProt:M1DLQ2	PFAM:PF00085
PFAM:PF07719	PFAM:PF13174	PFAM:PF13181	EnsemblPlantsGene:PGSC0003DMG400040585	PGSC:PGSC0003DMG400040585	EnsemblPlants:PGSC0003DMT400091014
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF402	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF52833	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2	InterPro:TPR_repeat	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI00029555A2	:	:	:	:

Description

Small glutamine-rich tetratricopeptide repeat-containing protein A [Source:PGSC_GENE;Acc:PGSC0003DMG400040585]

Coordinates

chr10:+:2243052..2245964

Molecular Weight (calculated)

67757.8 Da

IEP (calculated)

8.959

GRAVY (calculated)

-0.451

Length

607 amino acids

Sequence
(BLAST)

001: MSGRKKKSVY AVGSSSLADE MKNSLKFEED DELRRNSGKF TSVSSQNVHS VNFAMSGRKK KSVYAVGSSS LADEMKNSLK FEEDDELRRN SGKFTSVSSQ
101: NVHSVNFAIS GSKKKKFNEV GSKKKTVNEG KSASVEEAMT PAELNIKGCE YYEKGDYEQA LTFFDKAIAS SPDNGPLHCN RAGPLIGLMR YSEAIKECEE
201: AIRLAPTYFR AHERLGTFLL CLGQVENARK HLCFQGHKPD EATSLKLQEV SKHIKKCTNA RKLEDWPTML KEAKAAINSG AELSSQLFAC QAEAHLKLHQ
301: LDEARACMHT AMLCDPSAPA YKSKHFGILT EAYIYFVLSQ IHTAFGRFDK ACTAIERAAR VDPQNAEVIR LLKKMKLVGK GPFRGNDLFH AGRYTEACSA
401: YDEELTLDSS NSILYCDRAA CWSKLGEWEK SLADSNQALF IQPDYTKALS RRAISNLKLE RWADAVRDYK SLRQEHPDDR DIADFLSHAR AELKKSRREG
501: KMELVSDLEK FQAAIASGVS VVLFKEISNL QCSEMSSVVD ALSTKYYSSV RFLKVDVELS PAIAASVNIT TVPRVTIHKK GSRMSQLTIP RTDLLESMIK
601: KVIFAPN

Best Arabidopsis Sequence Match ( AT1G53300.1 )
(BLAST)

001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG

Arabidopsis Description

TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.