Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400054803 | Potato | cytosol | 64.88 | 65.99 |
| PGSC0003DMT400054904 | Potato | cytosol | 90.64 | 44.87 |
| Zm00001d004494_P001 | Maize | cytosol, mitochondrion | 28.09 | 37.84 |
| CDY34224 | Canola | cytosol | 8.7 | 37.68 |
| Solyc10g007240.1.1 | Tomato | cytosol | 73.91 | 37.21 |
| PGSC0003DMT400054911 | Potato | cytosol | 62.54 | 35.89 |
| PGSC0003DMT400054909 | Potato | cytosol | 46.82 | 33.98 |
| PGSC0003DMT400054796 | Potato | cytosol, plastid | 67.56 | 32.85 |
| Bra023795.1-P | Field mustard | cytosol | 9.03 | 30.68 |
| PGSC0003DMT400091014 | Potato | nucleus | 59.2 | 29.16 |
| Os05t0210600-01 | Rice | cytosol | 37.79 | 28.18 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 44.82 | 26.64 |
| PGSC0003DMT400032362 | Potato | cytosol | 58.19 | 24.86 |
| VIT_19s0014g01470.t01 | Wine grape | cytosol | 54.18 | 23.38 |
| KRH26223 | Soybean | nucleus | 51.51 | 22.78 |
| KRH55099 | Soybean | nucleus | 51.17 | 22.57 |
| KRH21985 | Soybean | cytosol | 52.17 | 22.54 |
| KRH27330 | Soybean | cytosol | 52.51 | 22.49 |
| GSMUA_Achr10P... | Banana | cytosol | 48.49 | 21.74 |
| CDY25722 | Canola | cytosol, plastid | 48.16 | 21.59 |
| CDY02514 | Canola | cytosol, plastid | 48.16 | 21.49 |
| Bra030946.1-P | Field mustard | cytosol, plastid | 48.16 | 21.49 |
| Bra038116.1-P | Field mustard | cytosol | 47.16 | 21.43 |
| CDY45930 | Canola | cytosol | 47.16 | 21.4 |
| CDY25865 | Canola | cytosol | 46.82 | 21.28 |
| AT1G53300.1 | Thale cress | cytosol | 48.49 | 20.74 |
| Zm00001d008930_P003 | Maize | cytosol | 45.82 | 20.3 |
| HORVU3Hr1G027650.2 | Barley | mitochondrion | 45.15 | 20.27 |
| TraesCS3A01G143000.1 | Wheat | cytosol | 45.48 | 20.24 |
| Os01t0218200-00 | Rice | plastid | 45.48 | 20.24 |
| GSMUA_Achr7P24480_001 | Banana | cytosol | 43.48 | 20.03 |
| Zm00001d039362_P002 | Maize | cytosol | 44.82 | 20.0 |
| Zm00001d044479_P001 | Maize | cytosol | 45.48 | 19.97 |
| EES01073 | Sorghum | cytosol | 45.48 | 19.97 |
| TraesCS3B01G162100.1 | Wheat | cytosol | 44.82 | 19.94 |
| GSMUA_Achr4P08560_001 | Banana | cytosol | 45.48 | 19.85 |
| HORVU3Hr1G054240.2 | Barley | cytosol, mitochondrion | 45.48 | 19.77 |
| HORVU1Hr1G093390.2 | Barley | cytosol | 44.48 | 19.76 |
| TraesCS3D01G231300.1 | Wheat | cytosol, mitochondrion | 45.15 | 19.62 |
| TraesCS3B01G251600.1 | Wheat | cytosol, mitochondrion | 45.15 | 19.62 |
| TraesCS3D01G144600.1 | Wheat | cytosol | 44.15 | 19.56 |
| Zm00001d011352_P001 | Maize | cytosol | 44.48 | 19.53 |
| TraesCS3A01G221800.1 | Wheat | cytosol | 44.82 | 19.48 |
| EES02247 | Sorghum | plastid | 44.48 | 19.44 |
| TraesCS1D01G437100.1 | Wheat | nucleus | 44.82 | 19.2 |
| TraesCS1B01G462300.1 | Wheat | cytosol | 44.48 | 19.16 |
| TraesCS1A01G427400.1 | Wheat | cytosol | 43.81 | 18.79 |
| GSMUA_Achr3P25160_001 | Banana | cytosol | 44.48 | 18.68 |
| AT3G14950.1 | Thale cress | cytosol | 45.48 | 18.63 |
| CDY34222 | Canola | cytosol | 19.06 | 18.51 |
| CDY40820 | Canola | mitochondrion | 17.39 | 18.51 |
| CDY32327 | Canola | cytosol | 44.82 | 18.38 |
| OQU78515 | Sorghum | cytosol | 42.81 | 18.29 |
| CDY20095 | Canola | nucleus | 44.15 | 18.13 |
| Bra021583.1-P | Field mustard | nucleus | 44.82 | 17.72 |
| PGSC0003DMT400022057 | Potato | plastid | 25.75 | 17.62 |
| CDX98517 | Canola | cytosol | 42.47 | 17.54 |
| Bra027292.1-P | Field mustard | cytosol | 42.47 | 17.3 |
| CDX97619 | Canola | cytosol | 41.14 | 16.97 |
| PGSC0003DMT400029173 | Potato | cytosol | 16.39 | 16.72 |
| PGSC0003DMT400045666 | Potato | cytosol | 28.76 | 15.78 |
| CDY34223 | Canola | cytosol | 16.05 | 14.72 |
| Bra023793.1-P | Field mustard | cytosol | 19.06 | 13.84 |
| Bra023794.1-P | Field mustard | cytosol, nucleus, plastid | 15.05 | 13.8 |
| PGSC0003DMT400053133 | Potato | cytosol, plastid | 27.09 | 13.52 |
| Os05t0587300-01 | Rice | cytosol | 25.08 | 13.51 |
| Zm00001d009724_P009 | Maize | cytosol | 42.14 | 11.79 |
| Zm00001d006366_P001 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d033961_P001 | Maize | cytosol | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400054902 | EnsemblPlantsGene:PGSC0003DMG400021303 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat |
| PANTHER:PTHR22904 | PANTHER:PTHR22904:SF402 | PFscan:PS50293 | PGSC:PGSC0003DMG400021303 | SMART:SM00028 | SUPFAM:SSF48452 |
| UniParc:UPI000295F081 | UniProt:M1BX10 | MapMan:35.1 | : | : | : |
Description
Small glutamine-rich tetratricopeptide repeat-containing protein A [Source:PGSC_GENE;Acc:PGSC0003DMG400021303]
Coordinates
chr10:+:2331759..2333840
Molecular Weight (calculated)
34401.4 Da
IEP (calculated)
7.498
GRAVY (calculated)
-0.228
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MIQLFACQAE AHLKLHQLTD AELWMYKARM YEASARAYKS KLFGMISEAY IFFVQAQIEN TLGKFDNACA AIERAAQVDL QSAEVIGLLK NMRLVGRARS
101: LGNELFKSGR YIEACSAYGE GLSRDSLNLI LYCNRATCWY KLEQWEKSLD DCNHALLIQP HYTKALFQKA ASNVKLERWA DAVRDYEILR QELPNDRELA
201: EFLFHCRVEL KKSQGEDVHN MTFVRKVDLV LDLDKFHTAI TSYATSVILF KEASNEQCKQ MSLVMDTLST KYRSVSFLEV NNHRQRHAIM ILHACTTGE
101: LGNELFKSGR YIEACSAYGE GLSRDSLNLI LYCNRATCWY KLEQWEKSLD DCNHALLIQP HYTKALFQKA ASNVKLERWA DAVRDYEILR QELPNDRELA
201: EFLFHCRVEL KKSQGEDVHN MTFVRKVDLV LDLDKFHTAI TSYATSVILF KEASNEQCKQ MSLVMDTLST KYRSVSFLEV NNHRQRHAIM ILHACTTGE
001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG
Arabidopsis Description
TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.