Factsheet for PGSC0003DMT400032362

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g062580.2.1	Tomato	cytosol	96.86	96.72
VIT_19s0014g01470.t01	Wine grape	cytosol	65.43	66.09
KRH26223	Soybean	nucleus	62.43	64.64
KRH21985	Soybean	cytosol	63.57	64.31
KRH55099	Soybean	nucleus	62.0	64.01
KRH27330	Soybean	cytosol	63.57	63.75
PGSC0003DMT400054803	Potato	cytosol	26.71	63.61
Bra038116.1-P	Field mustard	cytosol	57.14	60.79
CDY25865	Canola	cytosol	57.0	60.64
CDY45930	Canola	cytosol	56.29	59.79
CDY25722	Canola	cytosol, plastid	56.71	59.52
Bra030946.1-P	Field mustard	cytosol, plastid	56.71	59.25
CDY02514	Canola	cytosol, plastid	56.71	59.25
PGSC0003DMT400054902	Potato	cytosol	24.86	58.19
AT1G53300.1	Thale cress	cytosol	57.86	57.94
PGSC0003DMT400054904	Potato	cytosol	48.71	56.46
PGSC0003DMT400054796	Potato	cytosol, plastid	49.14	55.94
PGSC0003DMT400054911	Potato	cytosol	41.43	55.66
GSMUA_Achr10P...	Banana	cytosol	52.57	55.17
GSMUA_Achr7P24480_001	Banana	cytosol	51.14	55.16
GSMUA_Achr4P08560_001	Banana	cytosol	53.86	55.04
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	39.0	54.27
CDY34224	Canola	cytosol	5.29	53.62
EES01073	Sorghum	cytosol	51.86	53.3
PGSC0003DMT400054909	Potato	cytosol	31.29	53.16
Os01t0218200-00	Rice	plastid	50.86	52.98
Zm00001d039362_P002	Maize	cytosol	50.57	52.84
Zm00001d008930_P003	Maize	cytosol	50.71	52.59
TraesCS3B01G162100.1	Wheat	cytosol	50.43	52.53
Zm00001d044479_P001	Maize	cytosol	51.0	52.42
TraesCS3D01G231300.1	Wheat	cytosol, mitochondrion	51.29	52.18
HORVU1Hr1G093390.2	Barley	cytosol	50.14	52.15
TraesCS3D01G144600.1	Wheat	cytosol	50.29	52.15
Os05t0210600-01	Rice	cytosol	29.86	52.12
TraesCS1B01G462300.1	Wheat	cytosol	51.57	52.02
TraesCS3B01G251600.1	Wheat	cytosol, mitochondrion	51.0	51.89
TraesCS1D01G437100.1	Wheat	nucleus	51.71	51.86
TraesCS1A01G427400.1	Wheat	cytosol	51.57	51.79
TraesCS3A01G143000.1	Wheat	cytosol	49.71	51.79
TraesCS3A01G221800.1	Wheat	cytosol	50.86	51.74
Zm00001d011352_P001	Maize	cytosol	50.14	51.54
HORVU3Hr1G054240.2	Barley	cytosol, mitochondrion	50.57	51.45
EES02247	Sorghum	plastid	50.14	51.32
GSMUA_Achr3P25160_001	Banana	cytosol	51.71	50.84
OQU78515	Sorghum	cytosol	50.0	50.0
HORVU3Hr1G027650.2	Barley	mitochondrion	47.43	49.85
Bra023795.1-P	Field mustard	cytosol	6.14	48.86
GSMUA_AchrUn_...	Banana	cytosol	17.86	46.64
PGSC0003DMT400091014	Potato	nucleus	40.43	46.62
AT3G14950.1	Thale cress	cytosol	48.57	46.58
Zm00001d004494_P001	Maize	cytosol, mitochondrion	14.57	45.95
Os05t0587300-01	Rice	cytosol	36.43	45.95
CDY32327	Canola	cytosol	46.71	44.86
CDY20095	Canola	nucleus	46.57	44.78
Bra021583.1-P	Field mustard	nucleus	47.14	43.65
CDX98517	Canola	cytosol	45.14	43.65
Bra027292.1-P	Field mustard	cytosol	45.71	43.6
CDX97619	Canola	cytosol	45.14	43.59
CDY40820	Canola	mitochondrion	16.71	41.64
CDY34222	Canola	cytosol	17.86	40.58
Bra023793.1-P	Field mustard	cytosol	22.0	37.38
CDY34223	Canola	cytosol	17.0	36.5
PGSC0003DMT400022057	Potato	plastid	22.71	36.38
Bra023794.1-P	Field mustard	cytosol, nucleus, plastid	16.71	35.89
PGSC0003DMT400045666	Potato	cytosol	24.71	31.74
Zm00001d009724_P009	Maize	cytosol	48.43	31.71
PGSC0003DMT400053133	Potato	cytosol, plastid	26.86	31.39
PGSC0003DMT400029173	Potato	cytosol	9.29	22.18
Zm00001d006366_P001	Maize	cytosol	0.43	1.29
Zm00001d033961_P001	Maize	cytosol	0.43	1.29

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102604617	MapMan:11.3.2.5	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR013766	InterPro:IPR019734	UniProt:M1AXA6
PFAM:PF00085	PFAM:PF00515	PFAM:PF13432	EnsemblPlantsGene:PGSC0003DMG400012429	PGSC:PGSC0003DMG400012429	EnsemblPlants:PGSC0003DMT400032362
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF402	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF52833	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI0002968354	RefSeq:XP_006348295.1	SEG:seg	:	:

Description

TPR repeat-containing thioredoxin TTL1 [Source:PGSC_GENE;Acc:PGSC0003DMG400012429]

Coordinates

chr7:-:52703503..52707632

Molecular Weight (calculated)

75760.5 Da

IEP (calculated)

8.939

GRAVY (calculated)

-0.402

Length

700 amino acids

Sequence
(BLAST)

001: MSESGRHMSE IGLDGVTDRL KNSLTCVEDG NGVEINKPDF RELDLGSPVS PLRNRPRGFT ATTTTTTTTT TTTTTTTSSS SNSSGSGSVS GRNGSHLGPK
101: KSESSHSGEL SGSVESSPKA RGFKPGHARS YSSGGIAVNS PPLNVLPTGN ICPSGKILKT GMASKSSKTD VLGSGTGYYG HGSIMRGGAG VKSGGGAVGG
201: ADAGATQTAN LRGVMAGDTM KRGMLNSDPE ELKRLGNENY RKGYFVEALN LYDKAIAISP GNAAYHCNRA AALIGLKRLP EAVRECEEAI RLDPSYVRAH
301: HRLGSLLLSF GQVEKARSHI CFQGHQPDQA ELQKLQAVEK YIGKFTDARR VGDWTSMLRE VNAAIASGAD ASPQLFACRA EALLKLHQVE DAELSLSITR
401: KHEPSAGSPQ SKFFGMLSEA YVFFVQAQID LAMGRFESAI SAVERAGHID PRNIEVSVFL NNTRSVGRAR TRGNDLFKSE RYTEACAAYG EGLRRDSSNS
501: VLYCNRAACW YKLGQWEKAV DDCNQALTFQ PHYTKALLRK AASNTKLERW VEAVRDYEVL RKALPYDSEV AESLFHAQVA LKRSRGEDIH NMKFGGEVEL
601: VSGLEQFQAA ISSPCASVVH FKAASNLQCK QISPFLDTLT TKYPSINFLK VDVEESPAIA NAENVRIVPT FKIYKKGSRV KEMICPSQEV LESSVRHYSI

Best Arabidopsis Sequence Match ( AT1G53300.1 )
(BLAST)

001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG

Arabidopsis Description

TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.