CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25865	Canola	cytosol	96.05	96.2
CDY02514	Canola	cytosol, plastid	89.68	88.21
CDY25722	Canola	cytosol, plastid	89.07	88.01
AT1G53300.1	Thale cress	cytosol	86.8	81.83
KRH21985	Soybean	cytosol	65.55	62.43
KRH27330	Soybean	cytosol	63.88	60.32
KRH26223	Soybean	nucleus	61.61	60.06
KRH55099	Soybean	nucleus	61.61	59.88
VIT_19s0014g01470.t01	Wine grape	cytosol	62.22	59.16
PGSC0003DMT400032362	Potato	cytosol	59.79	56.29
Solyc07g062580.2.1	Tomato	cytosol	59.79	56.21
GSMUA_Achr10P...	Banana	cytosol	54.93	54.27
PGSC0003DMT400054803	Potato	cytosol	24.13	54.08
CDY34224	Canola	cytosol	5.61	53.62
GSMUA_Achr4P08560_001	Banana	cytosol	55.54	53.43
GSMUA_Achr7P24480_001	Banana	cytosol	52.05	52.85
CDY20095	Canola	nucleus	57.21	51.79
CDY32327	Canola	cytosol	57.21	51.71
Os01t0218200-00	Rice	plastid	52.5	51.49
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	39.0	51.09
Zm00001d039362_P002	Maize	cytosol	51.9	51.04
TraesCS3B01G162100.1	Wheat	cytosol	52.05	51.04
GSMUA_Achr3P25160_001	Banana	cytosol	54.93	50.84
Zm00001d008930_P003	Maize	cytosol	51.75	50.52
TraesCS3A01G143000.1	Wheat	cytosol	51.44	50.45
CDX98517	Canola	cytosol	55.39	50.41
TraesCS3D01G144600.1	Wheat	cytosol	51.59	50.37
HORVU1Hr1G093390.2	Barley	cytosol	51.29	50.22
CDX97619	Canola	cytosol	55.24	50.21
EES02247	Sorghum	plastid	52.05	50.15
TraesCS1B01G462300.1	Wheat	cytosol	52.2	49.57
Zm00001d044479_P001	Maize	cytosol	51.14	49.49
EES01073	Sorghum	cytosol	51.14	49.49
TraesCS1A01G427400.1	Wheat	cytosol	52.2	49.35
TraesCS1D01G437100.1	Wheat	nucleus	52.2	49.28
Os05t0210600-01	Rice	cytosol	29.74	48.88
CDY49237	Canola	cytosol	49.32	48.73
CDX71941	Canola	cytosol	49.77	48.66
OQU78515	Sorghum	cytosol	51.44	48.43
TraesCS3A01G221800.1	Wheat	cytosol	50.53	48.4
CDY61202	Canola	cytosol	49.17	48.29
TraesCS3B01G251600.1	Wheat	cytosol, mitochondrion	50.38	48.26
TraesCS3D01G231300.1	Wheat	cytosol, mitochondrion	50.38	48.26
HORVU3Hr1G027650.2	Barley	mitochondrion	48.41	47.9
Zm00001d011352_P001	Maize	cytosol	49.47	47.87
CDY42827	Canola	cytosol	48.71	47.84
CDY51514	Canola	cytosol	48.56	47.83
HORVU3Hr1G054240.2	Barley	cytosol, mitochondrion	49.62	47.53
PGSC0003DMT400054902	Potato	cytosol	21.4	47.16
CDY55390	Canola	cytosol	47.8	47.09
PGSC0003DMT400054904	Potato	cytosol	42.94	46.85
PGSC0003DMT400054796	Potato	cytosol, plastid	43.4	46.5
Solyc10g007240.1.1	Tomato	cytosol	41.12	45.62
Solyc10g007230.1.1	Tomato	cytosol	40.82	45.13
Os05t0587300-01	Rice	cytosol	37.78	44.86
GSMUA_AchrUn_...	Banana	cytosol	18.21	44.78
PGSC0003DMT400054909	Potato	cytosol	27.77	44.42
CDY34222	Canola	cytosol	20.49	43.83
Zm00001d004494_P001	Maize	cytosol, mitochondrion	14.72	43.69
PGSC0003DMT400054911	Potato	cytosol	34.45	43.57
CDY40820	Canola	mitochondrion	18.51	43.42
Solyc10g007420.2.1	Tomato	cytosol	26.86	41.65
CDY08814	Canola	cytosol, plastid	26.25	41.19
Solyc10g007250.1.1	Tomato	cytosol	17.15	40.5
Solyc10g007430.1.1	Tomato	cytosol, plastid	22.91	39.95
PGSC0003DMT400091014	Potato	nucleus	36.72	39.87
Solyc10g007220.1.1	Tomato	cytosol	30.5	39.8
CDY34223	Canola	cytosol	18.06	36.5
CDX78366	Canola	cytosol	24.58	36.32
CDX81156	Canola	cytosol	24.43	36.1
CDY00576	Canola	cytosol	5.77	32.48
CDX69861	Canola	cytosol, mitochondrion	27.47	32.32
CDY21634	Canola	cytosol, mitochondrion	27.31	32.14
CDY40077	Canola	cytosol	27.77	31.83
CDX85779	Canola	cytosol	27.62	31.65
Zm00001d009724_P009	Maize	cytosol	50.68	31.24
CDY68462	Canola	cytosol	27.92	31.24
CDX87474	Canola	cytosol	24.43	30.61
CDX88420	Canola	cytosol	23.98	30.04
CDX68030	Canola	cytosol	23.07	29.86
CDX79246	Canola	cytosol	22.76	29.3
CDY39682	Canola	cytosol	9.56	22.74
CDX72245	Canola	cytosol	8.8	22.05
CDY65185	Canola	cytosol	9.1	21.66
CDX68662	Canola	endoplasmic reticulum, mitochondrion	2.58	16.67
CDY28190	Canola	extracellular	2.43	15.69
CDX85780	Canola	nucleus	10.77	14.98
Zm00001d006366_P001	Maize	cytosol	0.46	1.29
Zm00001d033961_P001	Maize	cytosol	0.46	1.29

Protein Annotations

Gene3D:1.25.40.10	MapMan:11.3.2.5	Gene3D:3.40.30.10	GO:A0A078I4W9	UniProt:A0A078I4W9	EnsemblPlants:CDY45930
ProteinID:CDY45930	ProteinID:CDY45930.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00082921001
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR013766	InterPro:IPR019734	PFAM:PF00085	PFAM:PF13181
PFAM:PF13414	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF402
SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF52833	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0004EE014B	SEG:seg	:	:

Description

BnaC06g09990DBnaC06g09990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4W9]

Coordinates

chrLK032642:-:64491..67541

Molecular Weight (calculated)

71710.1 Da

IEP (calculated)

9.023

GRAVY (calculated)

-0.401

Length

659 amino acids

Sequence
(BLAST)

001: MSHSDKPVPE SNNRLRGSLT SDINKPDFRE LDLGSPVSPL RSQPRGLTTT TTTTSSSSSS SSGSVTGRIR HAPVTGRSGS VTGSQSGSRS DSVTSNSQQP
101: LSSSSSATSP STAAANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GGSSVSPAKP ISTRQALSSP VTVGSDPEEV KRVGNEMYKK
201: GLFSEALKLY DKAIALSPTN AAYRSNRAAA LTGLSRIGEA VKECEEALRL DPNYGRAHHR LALLLIRLGQ VDSARKHLCL FGKPSDPMEL RKLEAVENHM
301: SKCADARKLG DWKAALMEAD AAIVSGADFS SQLGMCKVEA LLKLHRLDDA HSKLLEVPRA EPFPASCSQT RFSGISCEAY TYFVKAHIEM ALGRFENAVM
401: AAEKASKIDP RSNEVAMLHN TVTLVARARV RGNDLYKSER YTEASSAYAE GLRLDPCNAI LYCNRAACWF KLGMWERSVE DCNQALRFQP RYTKPLLRRA
501: ACNNKMERWA AAVSDYEALR KELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEV YSREQFKAAM NLPGVSVIHF STVSDHQCKQ LSPFVDSLCT
601: RYPSIHFLTV DIDKCPSIGN AENVRVVPTV KIYKNGTRVK EIVCPSKEVL EYSVRHYSG

Best Arabidopsis Sequence Match ( AT1G53300.1 )
(BLAST)

001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG

Arabidopsis Description

TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.