CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34222	Canola	cytosol	92.17	84.09
CDY34224	Canola	cytosol	17.08	69.57
CDY34223	Canola	cytosol	56.58	48.77
PGSC0003DMT400054803	Potato	cytosol	23.84	22.79
Os05t0210600-01	Rice	cytosol	29.54	20.7
CDX98517	Canola	cytosol	49.47	19.2
CDX97619	Canola	cytosol	49.11	19.03
CDY02514	Canola	cytosol, plastid	45.2	18.96
PGSC0003DMT400054911	Potato	cytosol	34.52	18.62
CDY25722	Canola	cytosol, plastid	44.13	18.59
CDY45930	Canola	cytosol	43.42	18.51
CDY20095	Canola	nucleus	47.33	18.27
CDY25865	Canola	cytosol	42.7	18.24
CDY32327	Canola	cytosol	46.62	17.97
Solyc10g007220.1.1	Tomato	cytosol	32.03	17.82
PGSC0003DMT400054902	Potato	cytosol	18.51	17.39
KRH21985	Soybean	cytosol	42.7	17.34
KRH55099	Soybean	nucleus	41.64	17.26
KRH26223	Soybean	nucleus	41.28	17.16
CDY08814	Canola	cytosol, plastid	25.62	17.14
KRH27330	Soybean	cytosol	41.99	16.91
PGSC0003DMT400054909	Potato	cytosol	24.56	16.75
VIT_19s0014g01470.t01	Wine grape	cytosol	41.28	16.74
PGSC0003DMT400032362	Potato	cytosol	41.64	16.71
Solyc07g062580.2.1	Tomato	cytosol	41.64	16.69
Zm00001d004494_P001	Maize	cytosol, mitochondrion	13.17	16.67
CDX78366	Canola	cytosol	25.98	16.37
PGSC0003DMT400054796	Potato	cytosol, plastid	35.59	16.26
Solyc10g007240.1.1	Tomato	cytosol	34.16	16.16
Solyc10g007230.1.1	Tomato	cytosol	34.16	16.11
GSMUA_Achr10P...	Banana	cytosol	38.08	16.04
GSMUA_Achr7P24480_001	Banana	cytosol	37.01	16.02
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	28.47	15.9
Solyc10g007430.1.1	Tomato	cytosol, plastid	21.35	15.87
PGSC0003DMT400091014	Potato	nucleus	33.81	15.65
PGSC0003DMT400054904	Potato	cytosol	33.45	15.56
CDX81156	Canola	cytosol	24.56	15.47
GSMUA_Achr3P25160_001	Banana	cytosol	39.15	15.45
TraesCS3D01G231300.1	Wheat	cytosol, mitochondrion	37.72	15.41
TraesCS3B01G251600.1	Wheat	cytosol, mitochondrion	37.72	15.41
HORVU3Hr1G054240.2	Barley	cytosol, mitochondrion	37.72	15.41
TraesCS3A01G221800.1	Wheat	cytosol	37.37	15.26
Zm00001d008930_P003	Maize	cytosol	36.65	15.26
GSMUA_Achr4P08560_001	Banana	cytosol	37.01	15.18
Zm00001d039362_P002	Maize	cytosol	35.94	15.07
Solyc10g007420.2.1	Tomato	cytosol	22.78	15.06
CDX79246	Canola	cytosol	27.4	15.04
CDX87474	Canola	cytosol	28.11	15.02
Zm00001d044479_P001	Maize	cytosol	36.3	14.98
HORVU1Hr1G093390.2	Barley	cytosol	35.59	14.86
EES01073	Sorghum	cytosol	35.94	14.83
CDX88420	Canola	cytosol	27.76	14.83
EES02247	Sorghum	plastid	35.94	14.77
CDX68030	Canola	cytosol	26.69	14.73
HORVU3Hr1G027650.2	Barley	mitochondrion	34.88	14.71
TraesCS1B01G462300.1	Wheat	cytosol	36.3	14.7
Zm00001d011352_P001	Maize	cytosol	35.59	14.68
TraesCS1A01G427400.1	Wheat	cytosol	36.3	14.63
TraesCS1D01G437100.1	Wheat	nucleus	36.3	14.61
Os01t0218200-00	Rice	plastid	34.88	14.58
TraesCS3B01G162100.1	Wheat	cytosol	34.88	14.58
OQU78515	Sorghum	cytosol	36.3	14.57
Solyc10g007250.1.1	Tomato	cytosol	14.23	14.34
TraesCS3D01G144600.1	Wheat	cytosol	34.16	14.22
TraesCS3A01G143000.1	Wheat	cytosol	33.81	14.14
CDX71941	Canola	cytosol	33.81	14.1
CDY51514	Canola	cytosol	33.1	13.9
CDY61202	Canola	cytosol	33.1	13.86
CDY49237	Canola	cytosol	32.74	13.79
CDY42827	Canola	cytosol	32.03	13.41
Os05t0587300-01	Rice	cytosol	26.33	13.33
CDY55390	Canola	cytosol	31.67	13.3
CDX69861	Canola	cytosol, mitochondrion	25.62	12.86
CDY21634	Canola	cytosol, mitochondrion	25.62	12.86
CDY40077	Canola	cytosol	25.27	12.35
CDX85779	Canola	cytosol	25.27	12.35
CDY68462	Canola	cytosol	25.62	12.22
GSMUA_AchrUn_...	Banana	cytosol	10.68	11.19
Zm00001d009724_P009	Maize	cytosol	35.59	9.35
CDY39682	Canola	cytosol	8.54	8.66
CDX68662	Canola	endoplasmic reticulum, mitochondrion	2.85	7.84
CDX72245	Canola	cytosol	6.76	7.22
CDY65185	Canola	cytosol	7.12	7.22
CDY28190	Canola	extracellular	2.49	6.86
CDX85780	Canola	nucleus	7.83	4.64
CDY00576	Canola	cytosol	1.42	3.42
Zm00001d006366_P001	Maize	cytosol	0.0	0.0
Zm00001d033961_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078HQD2	EnsemblPlants:CDY40820	ProteinID:CDY40820	ProteinID:CDY40820.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00071747001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF402
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EEEF76
SEG:seg	:	:	:	:	:

Description

BnaC01g31360DBnaC01g31360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQD2]

Coordinates

chrLK032480:+:34665..35939

Molecular Weight (calculated)

31687.4 Da

IEP (calculated)

9.497

GRAVY (calculated)

-0.240

Length

281 amino acids

Sequence
(BLAST)

001: MFKTWRYREA LEFYDRAIEL SPKNVTYLSN RAAALSRLGR MGEALNQWED ALKLDPQFAQ ARHGLGMSLL SLGHIDEAMK LVEEASYNKY DLERGEISAP
101: LIPGSLLPYA WPELAMCRVE ALVKLSLVGE AHQTALNAAA LKVEPLPASF SQPQTRFFGM LCRAYAYFVK SQINFALVRY KDAAENAAKA LEIEPHNTEI
201: KIFKKNVELV QRALSSSKLE KWAEAVRDYE ILHQAMPYDK VIAKSLSQAQ VALKQSRREV IVKKGGDIKE ISSKTHTSKI I

Best Arabidopsis Sequence Match ( AT1G53300.1 )
(BLAST)

001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG

Arabidopsis Description

TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.